Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0786
         (445 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0373 - 13194723-13195847,13196219-13196809                       28   3.9  
01_03_0163 + 13346586-13347809                                         28   3.9  

>05_03_0373 - 13194723-13195847,13196219-13196809
          Length = 571

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 444 GGTWFQLRR*WRVETRGVIDFDLRCSAR 361
           G  + QL+R WR + RG++D D R   R
Sbjct: 506 GQRFLQLQREWRSDARGIVDGDGRFKFR 533


>01_03_0163 + 13346586-13347809
          Length = 407

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +1

Query: 259 SWAAAIDLLTNDECRLLLEVED 324
           SW AA+D +T DE R LLE  D
Sbjct: 115 SWDAALDGITADEARALLESID 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,356,938
Number of Sequences: 37544
Number of extensions: 216231
Number of successful extensions: 431
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)