Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0786
         (445 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1050| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.3  
SB_42680| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 27   9.2  
SB_31243| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_16920| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_2424| Best HMM Match : RVT_1 (HMM E-Value=6.2e-18)                  27   9.2  
SB_40103| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_12834| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_1050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 674

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +3

Query: 102 THNIKMLAKMAPSQDKLVHLHKTPTSLDINPSGLLFAFVELNHYNNECESEGVMG 266
           T + K  A + PSQD        PT+  +   GL     +L+HYN+    E ++G
Sbjct: 34  TTSFKSRAIVIPSQD--TKTESGPTN--VRKQGLKDLLSQLSHYNSNIRQEALLG 84


>SB_42680| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 700

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 146 QVSPSSQNTNITRHQSLWT 202
           QVS SS  TN  RH+S+W+
Sbjct: 458 QVSKSSNFTNSLRHKSVWS 476


>SB_31243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 317

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +3

Query: 81  CTPACAFTHNIKMLAKMAPSQDKL-VHLHKTPTSLDINPSGLLFAFVE 221
           C+ A  + HNIK +++  P +DKL + LH   TS     +GLL+   E
Sbjct: 131 CSSAFFWLHNIKRISQFLP-RDKLEMVLHAFVTSRIDFCNGLLYGLPE 177


>SB_16920| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 291

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 305 CCSKLRISSM-MIVICLKTFRALQRRSKSITPRVSTRHHRRS 427
           CC    +S M M +I L T+RAL ++   I+P       +RS
Sbjct: 150 CCMLCCVSFMWMSIIALDTWRALSKKRHRISPGNRRPRSKRS 191


>SB_2424| Best HMM Match : RVT_1 (HMM E-Value=6.2e-18)
          Length = 657

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +3

Query: 81  CTPACAFTHNIKMLAKMAPSQDKL-VHLHKTPTSLDINPSGLLFAFVE 221
           C+ A  + HNIK +++  P +DKL + LH   TS     +GLL+   E
Sbjct: 471 CSSAFFWLHNIKRISQFLP-RDKLEMVLHAFVTSRIDFCNGLLYGLPE 517


>SB_40103| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 284

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 128 NGALTGQVSPSSQNTNITRHQSLWTFIRIRGTKSLQ 235
           +G  TG  +PS  +TNI RH     +  +  T  ++
Sbjct: 57  SGITTGTATPSVNSTNIIRHYYWHRYAHVNSTNIIR 92


>SB_12834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1261

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
 Frame = +2

Query: 269  RPSICSLTMSAVCCSKLRISSMMIVICL-KTFRALQRRSKSITPRVSTRHHR 421
            R  I S    A CC  L +    +V CL  + R  QR S  ++     R  R
Sbjct: 1020 RRQISSNMFIAACCFPLPVGFFCLVYCLFMSLRGTQRNSNELSESYRERETR 1071


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,347,679
Number of Sequences: 59808
Number of extensions: 262662
Number of successful extensions: 584
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)