Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0786
         (445 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83233-8|CAB05759.2|  378|Caenorhabditis elegans Hypothetical pr...    29   1.1  
AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trn...    25   3.0  
AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trn...    25   3.0  
AF016685-16|AAG24152.2|  328|Caenorhabditis elegans Serpentine r...    28   3.5  
Z78546-1|CAB01769.1|  364|Caenorhabditis elegans Hypothetical pr...    27   6.1  
Z78546-7|CAB01772.1|  375|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AL023830-4|CAA19474.1|  375|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z83233-8|CAB05759.2|  378|Caenorhabditis elegans Hypothetical
           protein K06B4.8 protein.
          Length = 378

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 165 KTPTSLDINPSGLLFAFVELNHYNNEC 245
           KTP  LD     +L+ F+ELN  N EC
Sbjct: 232 KTPALLDQTSCMVLYKFIELNITNEEC 258


>AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trna
           synthetase protein1, isoform a protein.
          Length = 909

 Score = 24.6 bits (51), Expect(2) = 3.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 308 CSKLRISSMMIVICLKTFRALQRRSKSITPR 400
           C  LRI  M +   LK F  +++  +  TPR
Sbjct: 559 CGTLRIQGMKMSKSLKNFITIRKALEDYTPR 589



 Score = 21.8 bits (44), Expect(2) = 3.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 281 CSLTMSAVCCSKLRI 325
           CS+  SA+C SKL I
Sbjct: 510 CSVMSSAICGSKLDI 524


>AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trna
           synthetase protein1, isoform b protein.
          Length = 908

 Score = 24.6 bits (51), Expect(2) = 3.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 308 CSKLRISSMMIVICLKTFRALQRRSKSITPR 400
           C  LRI  M +   LK F  +++  +  TPR
Sbjct: 558 CGTLRIQGMKMSKSLKNFITIRKALEDYTPR 588



 Score = 21.8 bits (44), Expect(2) = 3.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 281 CSLTMSAVCCSKLRI 325
           CS+  SA+C SKL I
Sbjct: 509 CSVMSSAICGSKLDI 523


>AF016685-16|AAG24152.2|  328|Caenorhabditis elegans Serpentine
           receptor, class x protein1 protein.
          Length = 328

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 323 ISSMMIVICLK-TFRALQRRSKSITPRVSTRHHRRS*NQ 436
           +SS++ VIC    F  ++   KSITP ++  H +R   Q
Sbjct: 186 LSSIVPVICYSWIFYTIRSAHKSITPNMAPEHQKRQGRQ 224


>Z78546-1|CAB01769.1|  364|Caenorhabditis elegans Hypothetical
           protein T21H8.3 protein.
          Length = 364

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 266 LRPSICSLTMSAVCCSKLRISSMMIVICLKTFRA 367
           ++PS C + M    CSK+R S +   + + T  A
Sbjct: 82  IKPSPCDMLMRTEFCSKIRASFLFAFLLVSTSHA 115


>Z78546-7|CAB01772.1|  375|Caenorhabditis elegans Hypothetical
           protein T21H8.4 protein.
          Length = 375

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 266 LRPSICSLTMSAVCCSKLRISSMMIVICLKT 358
           ++PS C L +    CSK+R  + +   CL T
Sbjct: 82  IKPSPCDLLLKTYFCSKIR-GTFLFAFCLVT 111


>AL023830-4|CAA19474.1|  375|Caenorhabditis elegans Hypothetical
           protein T21H8.4 protein.
          Length = 375

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 266 LRPSICSLTMSAVCCSKLRISSMMIVICLKT 358
           ++PS C L +    CSK+R  + +   CL T
Sbjct: 82  IKPSPCDLLLKTYFCSKIR-GTFLFAFCLVT 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,743,309
Number of Sequences: 27780
Number of extensions: 191578
Number of successful extensions: 464
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)