Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0786
         (445 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g21830.1 68414.m02731 expressed protein EST gb|T21171 comes f...    29   1.9  
At5g55940.1 68418.m06977 expressed protein contains Pfam PF03665...    27   7.5  
At5g16210.1 68418.m01894 HEAT repeat-containing protein contains...    27   7.5  
At3g47080.1 68416.m05112 expressed protein                             27   7.5  
At4g26490.1 68417.m03812 expressed protein                             26   10.0 
At3g49770.1 68416.m05442 hypothetical protein heat shock protein...    26   10.0 
At1g18900.2 68414.m02353 pentatricopeptide (PPR) repeat-containi...    26   10.0 
At1g18900.1 68414.m02352 pentatricopeptide (PPR) repeat-containi...    26   10.0 

>At1g21830.1 68414.m02731 expressed protein EST gb|T21171 comes from
           this gene
          Length = 206

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 30/102 (29%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
 Frame = +2

Query: 86  TSVCLHAQYKNACQNGALTGQVSPSSQNTNITRHQSLWTFIRIRGTKSLQQ*VRV-RRSH 262
           T VC+     N   N     Q SP + NT+I  H S  + +R R  K +     V +   
Sbjct: 111 TKVCVDNNNNNTT-NSTCKKQQSPITSNTSIVEHNSAKSSLRWR--KRIGHLFHVIKLKS 167

Query: 263 GLRPSICSLTMSAVCCSKLRISSMMIVICLKTFRALQRRSKS 388
           G   S C +  S V  +K+R    M+       R   R+SKS
Sbjct: 168 GSSTSSCHVAPSKVEGTKVRKQGWMV---RTLTRKKSRKSKS 206


>At5g55940.1 68418.m06977 expressed protein contains Pfam PF03665:
           Uncharacterised protein family (UPF0172)
          Length = 208

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 68  VSNRLHTSVCLHA-QYKNACQNGALTGQVSP 157
           +S   +  + LH+ ++K A  NG L G++SP
Sbjct: 13  ISQNAYIKLVLHSLRHKTAAVNGVLVGRISP 43


>At5g16210.1 68418.m01894 HEAT repeat-containing protein contains
           Pfam profile PF02985: HEAT repeat
          Length = 1180

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 96  AFTHNIKMLAKMAPSQDKLVHLHKTPTSLDINPSGLL 206
           A  HN+ +L  + P+ DK   + +    L  +PSGL+
Sbjct: 590 AAAHNLALLLPLFPNTDKYFKVEEMMFQLICDPSGLV 626


>At3g47080.1 68416.m05112 expressed protein
          Length = 515

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 372 CSARKVFKQITIIIEEILNFEQQTALIVSEQI 277
           CS  + F  +  +IEE+ +F  QT + V +Q+
Sbjct: 217 CSINRAFSSMVFMIEELHSFALQTRVGVLKQV 248


>At4g26490.1 68417.m03812 expressed protein 
          Length = 200

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 304 LLLEVEDFFNDDCDLLKNFPSAATKIEI 387
           +  +  +FFN D  +L NF +   KIE+
Sbjct: 63  IYFDTPEFFNGDLSMLVNFTNPNKKIEV 90


>At3g49770.1 68416.m05442 hypothetical protein heat shock protein
           108 precursor, Gallus gallus, PIR:HHCH08
          Length = 223

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 313 EVEDFFNDDCDLLKNFP 363
           EV+D++N  CD +K FP
Sbjct: 170 EVDDYYNALCDFVKPFP 186


>At1g18900.2 68414.m02353 pentatricopeptide (PPR) repeat-containing
           protein low similarity to 67kD chloroplastic RNA-binding
           protein, P67 [Arabidopsis thaliana] GI:9755842; contains
           Pfam profile PF01535: PPR repeat
          Length = 860

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +2

Query: 179 TRHQSLWTFIRIRGTKSLQQ*VRVRRSHGLRPSICSLTMSAVCCS 313
           T +  L TF+R+       + ++   + GLRPS+ + T+   CC+
Sbjct: 611 TCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCT 655


>At1g18900.1 68414.m02352 pentatricopeptide (PPR) repeat-containing
           protein low similarity to 67kD chloroplastic RNA-binding
           protein, P67 [Arabidopsis thaliana] GI:9755842; contains
           Pfam profile PF01535: PPR repeat
          Length = 860

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +2

Query: 179 TRHQSLWTFIRIRGTKSLQQ*VRVRRSHGLRPSICSLTMSAVCCS 313
           T +  L TF+R+       + ++   + GLRPS+ + T+   CC+
Sbjct: 611 TCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCT 655


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,029,426
Number of Sequences: 28952
Number of extensions: 172624
Number of successful extensions: 431
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)