Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0785
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    31   0.074
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    30   0.17 
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    29   0.52 
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    29   0.52 
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    27   2.1  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    27   2.1  
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.4  
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran...    25   6.4  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.4  
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    25   8.4  
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe...    25   8.4  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    25   8.4  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    25   8.4  

>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 31.5 bits (68), Expect = 0.074
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 138 GDIVWGKVIGFPWWPGRVLSVTS 206
           G+ V  K+  FPWWP RV S  S
Sbjct: 64  GEYVLAKMSSFPWWPARVASQKS 86


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = +3

Query: 135 PGDIVWGKVIGFPWWPGRVLS---VTSASR 215
           PG  V  K+ GFPWWP  V++   +TS +R
Sbjct: 125 PGMRVLTKMSGFPWWPSMVVTESKMTSVAR 154


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 28.7 bits (61), Expect = 0.52
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 126 RISPGDIVWGKVIGFPWWPGRVL 194
           R++ GD +  K  G+PWWP  +L
Sbjct: 49  RLNFGDRILVKAPGYPWWPALLL 71


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 28.7 bits (61), Expect = 0.52
 Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
 Frame = +3

Query: 240 TTSSLMPCDSLSPFLEDYKLHFN---KKKRGPYKEAVKQATLEAKRNESQLSDPLASPTH 410
           T S +   D LSP   D  L  +   KK + P + ++   T  +      LS   ASP  
Sbjct: 519 TDSKVGIADVLSPISPDAALQSDGPLKKAKEPEESSITPTTPPSFNVGESLSRRSASPLQ 578

Query: 411 LATLSPRPIDVFS*CKR 461
               SP  +D  S CKR
Sbjct: 579 HPRTSPDMLDKTSPCKR 595


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 258 PCDSLSPFLEDYKLHFNKKKRGPYKEAVKQATLEAKRNE-SQLSD 389
           P D+L+P  E ++ H  +KK G    +V    + +  NE S LS+
Sbjct: 13  PSDNLAPRAELWQRHLLEKKEGDQSISVSAFNISSMHNELSGLSE 57


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 159 VIGFPWWPGRVLSVTSASRAH-VAWFASTTSSLMP 260
           VIG PW    ++S+ +  +   V +FA T SSL P
Sbjct: 88  VIGLPWLINDIVSLLNNRKGDVVTYFAYTLSSLPP 122


>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 394

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 363 KRNESQLSDPLASPT 407
           K N+S+L  PLASPT
Sbjct: 109 KENDSRLCSPLASPT 123


>SPCC417.11c |||glutamate-1-semialdehyde
           2,1-aminomutaseaminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 435

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 181 GHHGNPITLPHTISP 137
           G+HG P++  H ISP
Sbjct: 161 GYHGGPLSFAHGISP 175


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -1

Query: 176 PWEPNYLAPYYIPR*NPK*STTHPLCRCRRKFWYSFTLPFIRPTLGNFIFSTFLPR 9
           P+ P Y+  Y       K  +  P  RC R+F  S+ + F RP  G  +     PR
Sbjct: 136 PYPPGYMC-YKCHNTGYK-DSGRPCGRCARRFGRSYDVQFSRPPPGALVVYPGDPR 189


>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 144 YPQVKS*IIYYPPPL*MSEEILVQFHSPIHQTHSR*LHFLHI 19
           +P+ +S  + Y P L +S  +L  F    H      L+ LHI
Sbjct: 68  FPKSRSEKVVYTPSLPLSSSVLASFSFLPHNILQNGLNTLHI 109


>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 565

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 258 PCDSLSPFLEDYKLHFNKKKRGP 326
           P  +LSP  ++Y+ HF+  ++ P
Sbjct: 115 PFGNLSPLFDEYRQHFSSIEKKP 137


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 87  PPTSTEGVGSRLFRISPGDIVWGKVIGFPWWPGRVLSVTSA-SRAHVAW 230
           PP  ++   S +  I+   +V GKV G P +P  ++  ++  +R    W
Sbjct: 215 PPPPSDSANSSVTPIAAPLVVNGKVSGNPPYPAEIIPTSNVPNREEKDW 263


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +3

Query: 276 PFLEDYKLHFNKKK 317
           P  ++Y+LHFN+KK
Sbjct: 953 PDTQEYQLHFNRKK 966


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,157,183
Number of Sequences: 5004
Number of extensions: 45035
Number of successful extensions: 136
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)