Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0785
         (500 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55750| Best HMM Match : PWWP (HMM E-Value=6.4e-07)                  81   4e-16
SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   2e-05
SB_47268| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.10 
SB_9857| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.40 
SB_17045| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.93 
SB_56997| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_44729| Best HMM Match : SET (HMM E-Value=0)                         28   5.0  
SB_33448| Best HMM Match : MTS (HMM E-Value=0.00023)                   27   6.6  
SB_26262| Best HMM Match : PHD (HMM E-Value=4.1)                       27   6.6  
SB_9507| Best HMM Match : Cadherin (HMM E-Value=0)                     27   6.6  
SB_46063| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00015)         27   8.7  
SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)            27   8.7  
SB_12930| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_25887| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               27   8.7  

>SB_55750| Best HMM Match : PWWP (HMM E-Value=6.4e-07)
          Length = 532

 Score = 81.4 bits (192), Expect = 4e-16
 Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 8/82 (9%)
 Frame = +3

Query: 129 ISPGDIVWGKVIGFPWWPGRVLSVTSA--------SRAHVAWFASTTSSLMPCDSLSPFL 284
           I+ G I+WGKV G PWWPGRV+++T          + AHV WF S TSS MP   L  F 
Sbjct: 440 INEGSIIWGKVHGHPWWPGRVMAITEVVDDQGDVDTFAHVTWFGSNTSSEMPVQELQDFE 499

Query: 285 EDYKLHFNKKKRGPYKEAVKQA 350
            +++  + K K+G Y+ AV+QA
Sbjct: 500 PNFRRRYKKDKKGCYRRAVRQA 521


>SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1626

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 7/112 (6%)
 Frame = +3

Query: 132  SPGDIVWGKVIGFPWWPGRVLSVTSASRAH-------VAWFASTTSSLMPCDSLSPFLED 290
            S GD+VW +  G P WPG+++  ++  + H       V WF   T S +  + L    E 
Sbjct: 1058 STGDVVWAQARGLPSWPGQIVDESTVGKGHADEGKKWVKWFGDHTFSQVEVEKLKTLSEG 1117

Query: 291  YKLHFNKKKRGPYKEAVKQATLEAKRNESQLSDPLASPTHLATLSPRPIDVF 446
             +   +K ++  Y+    + +LE   +E+     + +   +   S  P   F
Sbjct: 1118 LRTLDDKARKKKYRARKARISLEQAISEAMKELEMRNGVEMTQESRDPFGSF 1169


>SB_47268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 722

 Score = 33.5 bits (73), Expect = 0.10
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 138 GDIVWGKVIGFPWWP 182
           G IVW K+ G+PWWP
Sbjct: 156 GAIVWAKLAGYPWWP 170


>SB_9857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1125

 Score = 31.5 bits (68), Expect = 0.40
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 135 PGDIVWGKVIGFPWWPGRVLSVT-SASRAHVAWFAS 239
           P ++VW K+ G P WP ++L+ +   +RA V +F S
Sbjct: 633 PHELVWAKMTGEPPWPAKLLTWSDDQTRALVRFFGS 668


>SB_17045| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1146

 Score = 30.3 bits (65), Expect = 0.93
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 93  TSTEGVGSRLFRISPGDIVWGKVIGFPWWPGRV 191
           TST+   S +F     D+VW K+ G P WP  V
Sbjct: 46  TSTKANDSHVFVQKICDVVWAKMEGHPIWPAIV 78


>SB_56997| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 675

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
 Frame = -2

Query: 166 PITLPHTISPGEILNNLLP-----TPSVDVGGN----SGTVSLSHSSDPLSVT 35
           P+TL  T++PG   N  +P     TP    G      SGTV+   SS   SVT
Sbjct: 563 PVTLSGTMTPGTTTNRTVPLSGSLTPGTPTGSRPVTLSGTVTAGTSSTSRSVT 615


>SB_44729| Best HMM Match : SET (HMM E-Value=0)
          Length = 1112

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 138 GDIVWGKVIGFPWWPGRV 191
           GDIVW K+  + WWP  +
Sbjct: 618 GDIVWVKLGMYRWWPAMI 635


>SB_33448| Best HMM Match : MTS (HMM E-Value=0.00023)
          Length = 165

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = -1

Query: 230 PSYMCSGCR-CDTKNSARPPWEPNY 159
           P+  C GC   D   S+R  W+PNY
Sbjct: 69  PAGFCEGCNEKDLDMSSRTAWDPNY 93


>SB_26262| Best HMM Match : PHD (HMM E-Value=4.1)
          Length = 367

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +3

Query: 204 SASRAHVAWFASTTSSLMPCDSLSPFLEDYKLHFNKKKRGPYKE 335
           SA R +V ++    SS  PC S  P     +   +K K+GPYKE
Sbjct: 111 SAHRDYVPFYLEAKSS-DPCSSPQPGEFCPRCAKDKNKQGPYKE 153


>SB_9507| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2735

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 312  KKRGPYKEAVKQATLEAKRNESQLSDP 392
            K RG YK       ++ KRN +++SDP
Sbjct: 2385 KMRGDYKRTSDPTDVKTKRNMNRMSDP 2411


>SB_46063| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00015)
          Length = 798

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = -2

Query: 178 HHGNPITLPHTISPGEILN---NLLPTPS 101
           HHG+P+  P    PG  ++   +LLP+P+
Sbjct: 103 HHGHPVVFPTGYPPGSSVSVSPSLLPSPT 131


>SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)
          Length = 715

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +3

Query: 192 LSVTSASRAHVAWFASTTSSLMPCDSLSPFLEDYKLHFNKKKRGPYKEAVKQATLEAKR 368
           +S T+    H+ +  S  S   P D         K+   K+KR PY E +++   E +R
Sbjct: 130 MSKTTDRHPHLVYRRSAMSVSGPGDQRPGCDTHEKISMEKRKREPYLELIRETGHERQR 188


>SB_12930| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 223

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 114 SRLFRISPGDIVWGKVIGFPWWPGRVLS-VTSASRAHVAWFASTTSSLMPCDSLSPFL 284
           S++  +S G + +      PWWP  +LS V S SR  V + A   S   P   LS  L
Sbjct: 25  SKVLSVSRG-VTYSAKPASPWWPNVILSKVLSVSRG-VTYSAKPASPWWPNVILSKVL 80


>SB_25887| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 1378

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -2

Query: 202  VTLRTLPGHHGNPITLPHTISPGEILNNLLPTPSVDVGGNSGTVSLS 62
            VTL+T  GH   PI+    + P EI  +++ T     GG   +  LS
Sbjct: 1298 VTLKTAKGHTNRPIS---KLYPLEITTDVVETADAQTGGQLQSNQLS 1341


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,304,598
Number of Sequences: 59808
Number of extensions: 350696
Number of successful extensions: 884
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)