Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0785
(500 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g40340.1 68418.m04894 PWWP domain-containing protein KED, Nic... 48 3e-06
At5g02950.1 68418.m00238 PWWP domain-containing protein predicte... 44 4e-05
At3g05430.1 68416.m00595 PWWP domain-containing protein contains... 42 2e-04
At3g09670.1 68416.m01146 PWWP domain-containing protein 42 3e-04
At5g27650.1 68418.m03313 PWWP domain-containing protein hypothet... 41 5e-04
At5g08230.1 68418.m00965 PWWP domain-containing protein putative... 33 0.082
At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (... 32 0.25
At3g03140.1 68416.m00310 expressed protein 31 0.44
At5g29000.2 68418.m03590 myb family transcription factor contain... 30 0.76
At2g31650.1 68415.m03864 trithorax 1 (ATX-1) (TRX1) identical to... 30 0.76
At5g23150.1 68418.m02707 PWWP domain-containing protein identica... 29 2.3
At3g27860.1 68416.m03474 PWWP domain-containing protein 28 3.1
At1g48560.1 68414.m05430 expressed protein 28 3.1
At1g06950.1 68414.m00738 chloroplast inner envelope protein-rela... 28 4.1
At4g03080.1 68417.m00416 kelch repeat-containing serine/threonin... 27 5.4
At5g57655.2 68418.m07204 xylose isomerase family protein contain... 27 7.1
At5g57655.1 68418.m07203 xylose isomerase family protein contain... 27 7.1
At5g56240.1 68418.m07018 expressed protein 27 7.1
At5g47860.1 68418.m05913 expressed protein 27 7.1
At5g29000.1 68418.m03589 myb family transcription factor contain... 27 7.1
At3g63070.1 68416.m07084 PWWP domain-containing protein putative... 27 7.1
At3g19960.1 68416.m02526 myosin (ATM) nearly identical to myosin... 27 7.1
At2g48160.1 68415.m06031 PWWP domain-containing protein 27 7.1
At5g38150.1 68418.m04598 expressed protein 27 9.4
At4g13760.1 68417.m02135 glycoside hydrolase family 28 protein /... 27 9.4
At2g40310.1 68415.m04966 glycoside hydrolase family 28 protein /... 27 9.4
At1g43100.1 68414.m04965 glycoside hydrolase family 28 protein /... 27 9.4
At1g43090.1 68414.m04964 glycoside hydrolase family 28 protein /... 27 9.4
At1g43080.1 68414.m04963 glycoside hydrolase family 28 protein /... 27 9.4
At1g05830.1 68414.m00610 trithorax protein, putative / PHD finge... 27 9.4
>At5g40340.1 68418.m04894 PWWP domain-containing protein KED,
Nicotiana tabacum, EMBL:AB009883
Length = 1008
Score = 48.4 bits (110), Expect = 3e-06
Identities = 37/125 (29%), Positives = 48/125 (38%), Gaps = 10/125 (8%)
Frame = +3
Query: 27 ENEVTESGSDEWESETVPEFPPTSTEGVGSRLFRISPGDIVWGKVIGFPWWPGRVLSVTS 206
E E E G DE E E E G GD VWGK+ PWWPG++ +
Sbjct: 98 EEEEEEDGEDEEEEEEEEEEEEEEEHGY-------CVGDFVWGKIKNHPWWPGQIYDPSD 150
Query: 207 AS----------RAHVAWFASTTSSLMPCDSLSPFLEDYKLHFNKKKRGPYKEAVKQATL 356
AS + VA F T + L PF E +K + AV++A
Sbjct: 151 ASDLALKIKQKGKLLVACFGDGTFAWCGASQLKPFAESFKECSKVSNSRSFLGAVEEAVE 210
Query: 357 EAKRN 371
E R+
Sbjct: 211 EIGRH 215
>At5g02950.1 68418.m00238 PWWP domain-containing protein predicted
protein, Arabidopsis thaliana
Length = 632
Score = 44.4 bits (100), Expect = 4e-05
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 10/99 (10%)
Frame = +3
Query: 102 EGVGSRLFRISPGDIVWGKVIGFPWWPGRVLSVTSASRA---H-------VAWFASTTSS 251
+G ++ D+VW K+ +PWWPG V + AS+A H VA+F T +
Sbjct: 86 KGFSKENLKLFDSDLVWAKLRSYPWWPGLVFDKSVASKAAMRHFKKGNVLVAYFGDCTFA 145
Query: 252 LMPCDSLSPFLEDYKLHFNKKKRGPYKEAVKQATLEAKR 368
+ PF +++ + +++A+ A E R
Sbjct: 146 WNNASQIKPFHQNFSQMQEQSNSAEFRDAIDCALDEVSR 184
>At3g05430.1 68416.m00595 PWWP domain-containing protein contains
Pfam profile:PF00855 PWWP domain
Length = 965
Score = 41.9 bits (94), Expect = 2e-04
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 13/70 (18%)
Frame = +3
Query: 42 ESGSDEWESETVPEFPP--------TSTEGVGSR-----LFRISPGDIVWGKVIGFPWWP 182
ESG + E VP++ + E +GSR + GD+VWGKV PWWP
Sbjct: 91 ESGEKKMEKRRVPDYKSFLSEFDDYVAREKMGSRNSKALSYGFEVGDMVWGKVKSHPWWP 150
Query: 183 GRVLSVTSAS 212
G++ + AS
Sbjct: 151 GQIFNEAFAS 160
>At3g09670.1 68416.m01146 PWWP domain-containing protein
Length = 726
Score = 41.5 bits (93), Expect = 3e-04
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Frame = +3
Query: 126 RISPGDIVWGKVIGFPWWPGRVLSVTSA---SRAH-------VAWFASTTSSLMPCDSLS 275
+IS D+VW KV PWWPG+V ++A ++ H V +F T + +
Sbjct: 196 KISDSDLVWAKVRSHPWWPGQVFDASAATDKAKKHFKKGSFLVTYFGDCTFAWNEASRIK 255
Query: 276 PFLEDYKLHFNKKKRGPYKEAVKQATLEAKR 368
PF + + + + +A+ A E R
Sbjct: 256 PFRQHFSQMAKQSSLPDFIDAIDFALEEVSR 286
>At5g27650.1 68418.m03313 PWWP domain-containing protein
hypothetical protein F22F7.12 - Arabidopsis thaliana,
EMBL:AC009606
Length = 1072
Score = 40.7 bits (91), Expect = 5e-04
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Frame = +3
Query: 138 GDIVWGKVIGFPWWPGRVLSVTSASRA--------H--VAWFASTTSSLMPCDSLSPFLE 287
GD+VWGKV PWWPG + + AS + H VA+F ++ L PF
Sbjct: 174 GDLVWGKVKSHPWWPGHIFNEAFASPSVRRMRRIDHVLVAFFGDSSYGWFDPAELIPFEP 233
Query: 288 DYKLHFNKKKRGPYKEAVKQATLEAKRNES 377
+ + + + AV++A EA R +
Sbjct: 234 NLEEKSQQTVSKHFVRAVEEAKDEASRRSA 263
>At5g08230.1 68418.m00965 PWWP domain-containing protein putative
transcription factor (HUA2) - Arabidopsis thaliana,
EMBL:AF116556
Length = 1445
Score = 33.5 bits (73), Expect = 0.082
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 10/107 (9%)
Frame = +3
Query: 138 GDIVWGKVIGFPWWPGRVLSVTSASRA-----HVAWFASTTS-SLMPCDSLSPFLEDYKL 299
GD+V KV GFP WP ++ ++A H F T + + PF + K
Sbjct: 21 GDLVLAKVKGFPAWPAKIGQPEDWNQAPDPKKHFVQFYGTGEIGFVTPPDIQPFTSETKK 80
Query: 300 HFNKKKRGP----YKEAVKQATLEAKRNESQLSDPLASPTHLATLSP 428
+ + +G + +AV++ + + ++ Q SD + + L + P
Sbjct: 81 KLSARCQGKTVKYFSQAVEEISAAFEESQKQKSDIVGNEALLNAVEP 127
>At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein
(Atm) identical to ataxia-telangiectasia mutated protein
(Atm) [Arabidopsis thaliana] GI:7529272; contains Pfam
profile PF00855: PWWP domain; contains GA donor splice
site at exon 73
Length = 3255
Score = 31.9 bits (69), Expect = 0.25
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Frame = +3
Query: 138 GDIVWGKVIGFPWWPGRVLS----------VTSASRAH-VAWFASTTSSLMPCDSLSPFL 284
G++VW WWPG V+ V S ++H V+WFAS+ L PF
Sbjct: 109 GNLVWVMTKYKKWWPGEVVDFKADAKESFMVRSIGQSHLVSWFASS--------KLKPFK 160
Query: 285 EDYKLHFNKKKRGPYKEAVKQA 350
E ++ N++ + +A+++A
Sbjct: 161 ESFEQVLNQRNDNGFFDALQKA 182
>At3g03140.1 68416.m00310 expressed protein
Length = 769
Score = 31.1 bits (67), Expect = 0.44
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +3
Query: 138 GDIVWGKVIGFPWWPGRVLSVTSASRAHV 224
G IVW + WWPGR+L H+
Sbjct: 14 GSIVWVRRRNGSWWPGRILGQEDLDSTHI 42
>At5g29000.2 68418.m03590 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 413
Score = 30.3 bits (65), Expect = 0.76
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -2
Query: 145 ISPG-EILNNLLPTPSVDVGGNSGTVSLSHSSDPLSVTSFSPH 20
+S G E++NN +P SV GGNSG SS +V++ PH
Sbjct: 37 VSSGQELMNNPVPCQSVS-GGNSGGYLFPSSSGYCNVSAVLPH 78
>At2g31650.1 68415.m03864 trithorax 1 (ATX-1) (TRX1) identical to
trithorax-like protein 1 GI:12659210 from [Arabidopsis
thaliana]; characterized in Alvarez-Venegas R,et al,
ATX-1, an Arabidopsis Homolog of Trithorax, Activates
Flower Homeotic Genes.(Curr Biol. 2003 Apr
15;13(8):627-37 PMID: 12699618); contains Pfam profiles
PF00856: SET domain, PF00855: PWWP domain, PF00628,
PHD-finger; identical to cDNA trithorax-like protein 1
(TRX1) GI:12659209
Length = 1062
Score = 30.3 bits (65), Expect = 0.76
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 135 PGDIVWGKVIGFPWWPGRVL 194
PGDIVW K+ G WP ++
Sbjct: 301 PGDIVWAKLAGHAMWPAVIV 320
>At5g23150.1 68418.m02707 PWWP domain-containing protein identical
to cDNA putative transcription factor (HUA2) GI:4868119;
contains Pfam profile PF00855: PWWP domain
Length = 1392
Score = 28.7 bits (61), Expect = 2.3
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 138 GDIVWGKVIGFPWWPGRV 191
GD+V KV GFP WP ++
Sbjct: 21 GDLVLAKVKGFPAWPAKI 38
>At3g27860.1 68416.m03474 PWWP domain-containing protein
Length = 652
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +3
Query: 138 GDIVWGKVIGFP-WWPGRVLSVTSAS 212
GD VWG+ WWPG++ AS
Sbjct: 64 GDFVWGEEANSQQWWPGQIYDSLDAS 89
>At1g48560.1 68414.m05430 expressed protein
Length = 643
Score = 28.3 bits (60), Expect = 3.1
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +3
Query: 138 GDIVWGKV-IGFPWWPGRVLSVTSASRAHVAWFASTTSSLMPCDSLSPFLEDYK 296
G++VW V W PGR++ + + V++F +P L F D+K
Sbjct: 5 GELVWVSVSFSNTWIPGRIIDPSESLGVLVSFFGLMDPRYVPKPFLRSFDRDFK 58
>At1g06950.1 68414.m00738 chloroplast inner envelope protein-related
similar to chloroplast inner envelope protein GI:1495767
from [Pisum sativum]
Length = 1016
Score = 27.9 bits (59), Expect = 4.1
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Frame = +3
Query: 159 VIGFPWWPGRVLSVTSASRAHVAWFASTTSS--LMPCDSLSPFLEDY--KLHFNKKKRGP 326
++G +SV S+++ A+ SS L DS + +L+ +LHF+ +K G
Sbjct: 454 ILGLGKREAEAISVDVTSKSYRKRLANAVSSGDLEAQDSKAKYLQKLCEELHFDAQKAGA 513
Query: 327 YKEAVKQATLEAKRNESQLSD 389
E + + L+ + +LSD
Sbjct: 514 IHEEIYRQKLQQCVTDGELSD 534
>At4g03080.1 68417.m00416 kelch repeat-containing serine/threonine
phosphoesterase family protein contains Pfam profiles:
PF00149 calcineurin-like phosphoesterase, PF01344 kelch
motif
Length = 881
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +3
Query: 27 ENEVTESGSDEWESETVPEFPPTSTEG 107
EN SG D W E + PPT T G
Sbjct: 841 ENSPEHSGDDAWMQELNIQRPPTPTRG 867
>At5g57655.2 68418.m07204 xylose isomerase family protein contains
similarity to Xylose isomerase (EC 5.3.1.5)
(Swiss-Prot:P22842) [Thermoanaerobacter ethanolicus]
Length = 477
Score = 27.1 bits (57), Expect = 7.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 45 SGSDEWESETVPEFPPTSTEGVGSR 119
S SD+W+ + PE P EG S+
Sbjct: 36 SDSDDWQGDFFPEIPKIKYEGPSSK 60
>At5g57655.1 68418.m07203 xylose isomerase family protein contains
similarity to Xylose isomerase (EC 5.3.1.5)
(Swiss-Prot:P22842) [Thermoanaerobacter ethanolicus]
Length = 287
Score = 27.1 bits (57), Expect = 7.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 45 SGSDEWESETVPEFPPTSTEGVGSR 119
S SD+W+ + PE P EG S+
Sbjct: 36 SDSDDWQGDFFPEIPKIKYEGPSSK 60
>At5g56240.1 68418.m07018 expressed protein
Length = 986
Score = 27.1 bits (57), Expect = 7.1
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 5/28 (17%)
Frame = -2
Query: 187 LPGHHGN-----PITLPHTISPGEILNN 119
+P HHG PIT+ TISP NN
Sbjct: 785 VPSHHGTITEAEPITIDKTISPSRFRNN 812
>At5g47860.1 68418.m05913 expressed protein
Length = 431
Score = 27.1 bits (57), Expect = 7.1
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Frame = -2
Query: 205 DVTLRTLPGHHGNPI--TLPHTISPG 134
D+++RTLPG HG P+ LP + PG
Sbjct: 338 DMSIRTLPGDHGLPLQQALP-DVPPG 362
>At5g29000.1 68418.m03589 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 370
Score = 27.1 bits (57), Expect = 7.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 127 LNNLLPTPSVDVGGNSGTVSLSHSSDPLSVTSFSPH 20
+NN +P SV GGNSG SS +V++ PH
Sbjct: 1 MNNPVPCQSVS-GGNSGGYLFPSSSGYCNVSAVLPH 35
>At3g63070.1 68416.m07084 PWWP domain-containing protein putative
transcription factor HUA2, Arabidopsis thaliana,
EMBL:AF116556
Length = 1347
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +3
Query: 138 GDIVWGKVIGFPWWPGRV 191
GD+V KV GFP WP V
Sbjct: 25 GDLVLAKVKGFPAWPAVV 42
>At3g19960.1 68416.m02526 myosin (ATM) nearly identical to myosin
[Arabidopsis thaliana] GI:6491702; similar to myosin
GI:6491702 from [Arabidopsis thaliana] ;contains Pfam
profiles: PF00063: myosin head (motor domain), PF00612:
IQ calmodulin-binding motif; identical to cDNA myosin
(ATM) GI:297068
Length = 1166
Score = 27.1 bits (57), Expect = 7.1
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +3
Query: 36 VTESGSDEWESETVPEFPPTSTEGVGSRLFRISPGDIVWGKV 161
V S + +W+S + +F ++ GVGSRL +S G V G++
Sbjct: 1037 VNASDATDWDSSS-NQFRSQTSNGVGSRLQPMSAGLSVIGRL 1077
>At2g48160.1 68415.m06031 PWWP domain-containing protein
Length = 1366
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +3
Query: 138 GDIVWGKVIGFPWWPGRV 191
GD+V KV GFP WP V
Sbjct: 25 GDLVLAKVKGFPAWPAVV 42
>At5g38150.1 68418.m04598 expressed protein
Length = 574
Score = 26.6 bits (56), Expect = 9.4
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +3
Query: 243 TSSLMPCDSLSPFLEDYKLHFNKKKRGPYKEAVKQATLEAKRNESQLSDPLASPTHLATL 422
+S+L+ + L +H ++KK G Y E+ + + R E+ LS+ S LA L
Sbjct: 10 SSTLLDLPVVKSSLVVEAIHMSRKKLGWYNESRRDSETVKARVEAGLSEVKKSVEELALL 69
Query: 423 SPR 431
R
Sbjct: 70 IKR 72
>At4g13760.1 68417.m02135 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
SP|P35339 Exopolygalacturonase precursor (EC 3.2.1.67)
(Pectinase) (Galacturan 1,4-alpha-galacturonidase) {Zea
mays}; contains PF00295: Glycosyl hydrolases family 28
(polygalacturonases)
Length = 375
Score = 26.6 bits (56), Expect = 9.4
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 481 MKLNKFGRLH*ENTSIGLGDSVAKCVGLARGSLN*D 374
+K+ +H NT+IG GD C+ + G+ N D
Sbjct: 175 IKMGSCSNIHISNTNIGTGDD---CIAILSGTTNLD 207
>At2g40310.1 68415.m04966 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
SP|P35339 Exopolygalacturonase precursor (EC 3.2.1.67)
(Pectinase) {Zea mays}; contains Pfam profile PF00295:
Glycosyl hydrolases family 28
(polygalacturonases)(Galacturan
1,4-alpha-galacturonidase)
Length = 404
Score = 26.6 bits (56), Expect = 9.4
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 481 MKLNKFGRLH*ENTSIGLGDSVAKCVGLARGSLN*D 374
+K+ +H NT+IG GD C+ + G+ N D
Sbjct: 204 IKMGSCSNMHISNTNIGTGDD---CIAILSGTTNLD 236
>At1g43100.1 68414.m04965 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
SP|P35339 Exopolygalacturonase precursor (EC 3.2.1.67)
(Pectinase) (Galacturan 1,4-alpha-galacturonidase) {Zea
mays}; contains Pfam profile PF00295: Glycosyl
hydrolases family 28 (polygalacturonases)
Length = 444
Score = 26.6 bits (56), Expect = 9.4
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 481 MKLNKFGRLH*ENTSIGLGDSVAKCVGLARGSLN*D 374
+K+ +H NT+IG GD C+ + G+ N D
Sbjct: 204 IKMGSCSNIHISNTNIGTGDD---CIAILSGTTNLD 236
>At1g43090.1 68414.m04964 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
SP|P35339 Exopolygalacturonase precursor (EC 3.2.1.67)
(Pectinase) (Galacturan 1,4-alpha-galacturonidase) {Zea
mays}; contains Pfam profile PF00295: Glycosyl
hydrolases family 28 (polygalacturonases)
Length = 444
Score = 26.6 bits (56), Expect = 9.4
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 481 MKLNKFGRLH*ENTSIGLGDSVAKCVGLARGSLN*D 374
+K+ +H NT+IG GD C+ + G+ N D
Sbjct: 204 IKMGSCSNIHISNTNIGTGDD---CIAILSGTTNLD 236
>At1g43080.1 68414.m04963 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
SP|P35339 Exopolygalacturonase precursor (EC 3.2.1.67)
(Pectinase) (Galacturan 1,4-alpha-galacturonidase) {Zea
mays}; contains Pfam profile PF00295: Glycosyl
hydrolases family 28 (polygalacturonases)
Length = 404
Score = 26.6 bits (56), Expect = 9.4
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 481 MKLNKFGRLH*ENTSIGLGDSVAKCVGLARGSLN*D 374
+K+ +H NT+IG GD C+ + G+ N D
Sbjct: 204 IKMGSCSNIHISNTNIGTGDD---CIAILSGTTNLD 236
>At1g05830.1 68414.m00610 trithorax protein, putative / PHD finger
family protein / SET domain-containing protein similar
to trithorax-like protein 1 [Arabidopsis thaliana]
GI:12659210; contains Pfam domain, PF00628: PHD-finger
and PF00856: SET domain
Length = 1056
Score = 26.6 bits (56), Expect = 9.4
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +3
Query: 135 PGDIVWGKVIGFPWWPGRVL 194
P DI+W K+ G WP ++
Sbjct: 315 PRDIIWAKLTGHAMWPAIIV 334
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,415,618
Number of Sequences: 28952
Number of extensions: 245805
Number of successful extensions: 756
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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