Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0784
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    28   1.0  
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc...    25   7.3  
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   7.3  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   9.6  

>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 427  EKIKNSHAKAQSQEITIYTLI*HCPRQYFTHKRGLR 534
            EK+K+ + K    E+ I   +  C R+YF   R LR
Sbjct: 1858 EKLKDLNCKNSMNEMCIENFLMKCTRKYFDEVRKLR 1893


>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
           Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 329

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -2

Query: 177 LHCIYFTWYL--WVMLMRVTVLSALLYVKLLRLG 82
           L  I+ T++   WV  ++VTV+S    VK++ +G
Sbjct: 122 LALIFLTYFYETWVKAVKVTVISLAKCVKVISIG 155


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +2

Query: 14  SARGRERTSLDRLNHLINYQYP*PKRNNLTYKS 112
           SAR  +R  ++ LNHL+N+Q+  P+ N+  + +
Sbjct: 114 SARTNKRGQIN-LNHLLNFQFT-PRTNSNAFSA 144


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 303 TGLDTEMVFIECYYSFFLKYVTKISLDTLYLL 208
           T L+  + F++   SFF+K  T + ++  YL+
Sbjct: 249 TLLEESIAFLQSLTSFFMKANTALKIEYAYLM 280


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,006,124
Number of Sequences: 5004
Number of extensions: 36234
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)