Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0784
         (547 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0070 - 20670387-20670473,20672418-20672645,20673388-206735...    31   0.79 
07_03_1658 + 28430772-28430841,28430954-28431044,28431177-28431321     29   2.4  
07_03_0161 - 14560287-14560426,14560467-14560707                       27   7.4  

>09_06_0070 -
           20670387-20670473,20672418-20672645,20673388-20673508,
           20673604-20673702,20673802-20673833
          Length = 188

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -2

Query: 270 CYYSFFLKYVTKISLDTLYLLNFM*IYGIRKLHCIYFTWY 151
           C Y   L ++T +   T + ++++ +YG  KL  + + WY
Sbjct: 41  CQYWILLAFLTTLETITYFTVSWLPMYGEAKLALVLYLWY 80


>07_03_1658 + 28430772-28430841,28430954-28431044,28431177-28431321
          Length = 101

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 20/78 (25%), Positives = 36/78 (46%)
 Frame = +1

Query: 295 ETGEVMLSVIKIKVNSKL*GVGTAALAANVGALTFNFNVNFYAIEKIKNSHAKAQSQEIT 474
           E    M S+ +  V+ KL  VGT  L     ++ +N++        +K  HA+  +Q +T
Sbjct: 3   EEKSTMQSMREWVVDHKLRAVGTLWLTGVASSIAYNWSRPGMKTS-VKIIHARLHAQALT 61

Query: 475 IYTLI*HCPRQYFTHKRG 528
           +  L      +Y+ H+ G
Sbjct: 62  LAALAGSALVEYYDHRSG 79


>07_03_0161 - 14560287-14560426,14560467-14560707
          Length = 126

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 513 EVLAWTMSNQCVNCDLL 463
           EV  W MSN C NC L+
Sbjct: 100 EVTIWVMSNACKNCRLI 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,499,727
Number of Sequences: 37544
Number of extensions: 209273
Number of successful extensions: 349
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)