Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0784
         (547 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56117| Best HMM Match : PAN (HMM E-Value=0.00046)                   30   1.4  
SB_42582| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_42584| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  

>SB_56117| Best HMM Match : PAN (HMM E-Value=0.00046)
          Length = 107

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 324 DHTEHNLTGLDTEMVFIECYYSFFLKYVT 238
           +HT  N+TG+D E   ++CY + F +  T
Sbjct: 14  NHTTFNITGIDEENCSVKCYLNDFCQSTT 42


>SB_42582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 939

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 324 DHTEHNLTGLDTEMVFIECYYSFF 253
           +HT +N+TG+D E   ++CY + F
Sbjct: 806 NHTTYNITGIDEEDCSVKCYLNDF 829



 Score = 28.7 bits (61), Expect = 3.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 324 DHTEHNLTGLDTEMVFIECYYSFF 253
           +HT  N+TG+D E   ++CY + F
Sbjct: 14  NHTTFNITGIDEENCSVKCYLNDF 37


>SB_42584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 226

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 324 DHTEHNLTGLDTEMVFIECYYSFF 253
           +HT  N+TG+D E   ++CY + F
Sbjct: 18  NHTTFNITGIDEENCSVKCYLNDF 41


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,001,456
Number of Sequences: 59808
Number of extensions: 267849
Number of successful extensions: 442
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)