Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0784
         (547 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000299-3|AAW88403.1|  342|Caenorhabditis elegans Serpentine re...    31   0.72 
Z29121-1|CAA82387.3|  324|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AF068713-11|AAC17792.1|  315|Caenorhabditis elegans Serpentine r...    27   6.7  

>AF000299-3|AAW88403.1|  342|Caenorhabditis elegans Serpentine
           receptor, class z protein24, isoform a protein.
          Length = 342

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 17/78 (21%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
 Frame = -2

Query: 321 HTEHNLTGLDTEMVFIECYYSFFLKYVTKISLDT-LYLLNFM*IYGIRKLHCIYFTWYLW 145
           +  H  + L  +   ++  + F+L +V K S    LY+L F  +   ++ H +      +
Sbjct: 147 YPSHIESVLKVQKYILKFIWIFYLLFVIKESTGIILYVLKFSKMITTKENHSVILDLITF 206

Query: 144 VMLMRVTVLSALLYVKLL 91
           ++L  + V+++LLY+ ++
Sbjct: 207 IVLNSLLVITSLLYIPII 224


>Z29121-1|CAA82387.3|  324|Caenorhabditis elegans Hypothetical
           protein ZK757.1 protein.
          Length = 324

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -1

Query: 280 IYRMLLQFFFKICNKNLIRHFIFA*FYVNLRDKEITLHLFYLVF 149
           ++ + L  FF IC  +L+R F    F+V L    ++L LF+L F
Sbjct: 34  VFNLFLCIFF-ICRPHLLRTFKPTIFFVTLGTFVLSLPLFFLQF 76


>AF068713-11|AAC17792.1|  315|Caenorhabditis elegans Serpentine
           receptor, class i protein21 protein.
          Length = 315

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 355 VGTAALAANVGALTFNFNVNFYAIEKIKNSHAKAQSQEITIYTLI 489
           VG+ A+     ALT  F   + A+ +I+N  +K+    + I+T I
Sbjct: 98  VGSIAIGEQAAALTMCFVRKYQALSRIRNEVSKSSIIFVWIFTQI 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,212,013
Number of Sequences: 27780
Number of extensions: 207478
Number of successful extensions: 351
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)