Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0784
         (547 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12540.1 68416.m01560 expressed protein contains Pfam profile...    28   4.7  
At1g55090.1 68414.m06292 carbon-nitrogen hydrolase family protei...    28   4.7  
At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger) fa...    27   6.2  
At5g27760.1 68418.m03329 hypoxia-responsive family protein conta...    27   8.2  

>At3g12540.1 68416.m01560 expressed protein contains Pfam profile
           PF04784: Protein of unknown function, DUF547
          Length = 503

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 429 EDKKLARKSTIARDHNLHIDLTLSTPVLHAQAGTT 533
           ED K   KS    DH++  D+ +++P  HA  G+T
Sbjct: 115 EDLKQRSKSQSYGDHHVVKDIQMNSPRTHASIGST 149


>At1g55090.1 68414.m06292 carbon-nitrogen hydrolase family protein
           low similarity to SP|P71911 Glutamine-dependent NAD(+)
           synthetase (EC 6.3.5.1) {Mycobacterium tuberculosis};
           contains Pfam profile PF00795: hydrolase,
           carbon-nitrogen family
          Length = 725

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -1

Query: 184 KEITLHLFYLVFMGNVNEGNGFKRAFVR*VVTFGLWIL 71
           KE    +FY VFMG+ N     KR   +     G W L
Sbjct: 406 KEFAKRIFYTVFMGSENSSEETKRRSKQLADEIGAWHL 443


>At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger)
           family protein predicted proteins, Arabidopsis thaliana
           ; contains Pfam profile PF00097: Zinc finger, C3HC4 type
           (RING finger)
          Length = 411

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = -2

Query: 315 EHNLT-GLDTEMVFIECYYSFFLKYVTKISLDTLYLLNFM*IYGIRKLHCIYFTWYLWVM 139
           EH L   L+++ +F+   +SF L  +       L +  ++  Y   +   +    +L   
Sbjct: 307 EHLLIRDLNSQAIFVAAPFSFTLALLASTFAVILAIREYIWTYAALEFALVALLVHLLYA 366

Query: 138 LMRVTVLSALLYVKLLRLG 82
            +RV V+ A+L+  +L  G
Sbjct: 367 TLRVPVIYAMLFAGILGFG 385


>At5g27760.1 68418.m03329 hypoxia-responsive family protein contains
           Pfam profile: PF04588 hypoxia induced protein conserved
           region
          Length = 96

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = +1

Query: 334 VNSKL*GVGTAALAANVGALTFNFNVNFYAIEKIKNSHAKAQSQEITIYTLI*HCPRQYF 513
           +  KL  VG   L+   G++ +N++        ++  HA+  +Q +T+  L      +Y+
Sbjct: 16  IEHKLRTVGCLWLSGISGSIAYNWSKPAMKTS-VRIIHARLHAQALTLAALAGAAAVEYY 74

Query: 514 THKRG 528
            HK G
Sbjct: 75  DHKSG 79


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,297,965
Number of Sequences: 28952
Number of extensions: 179948
Number of successful extensions: 286
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)