Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0783
         (473 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   154   6e-39
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   154   6e-39
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           27   1.5  
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...    27   1.5  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    25   4.5  
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...    25   5.9  
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    25   7.8  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  154 bits (374), Expect = 6e-39
 Identities = 66/102 (64%), Positives = 82/102 (80%)
 Frame = +3

Query: 72  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 251
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60

Query: 252 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTG 377
           TCQ+  SR+ GD+++  A+S ELPRYG+K GL N+ AAY+TG
Sbjct: 61  TCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATG 102


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  154 bits (374), Expect = 6e-39
 Identities = 66/102 (64%), Positives = 82/102 (80%)
 Frame = +3

Query: 72  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 251
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60

Query: 252 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTG 377
           TCQ+  SR+ GD+++  A+S ELPRYG+K GL N+ AAY+TG
Sbjct: 61  TCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATG 102


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 402 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 310
           EAV + + D  + L  +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199


>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 14  LQEFGTRRLWTPLCNLDLKYGIR*SCEEQTILQEVPSKIQE 136
           L++ GTR L  P+C L     ++    E+    EVPS ++E
Sbjct: 2   LRQAGTRLLKVPVCGLRPSITLKRGYAEKAAPTEVPSILEE 42


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -1

Query: 200 FVLVLNNEAFTSIIISFPFTTPLEFYLVPLEVLFVLHNFNESHIL---NLSYKVAS 42
           F  +L     T + +SF F+T  +  +  +  LF  H F+ S ++   N+ Y+V S
Sbjct: 469 FATILAAFGTTLLSLSFVFSTSAQELMSSIIFLFSKHPFDISDVVIVNNIKYEVVS 524


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = +3

Query: 240 NKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAA 362
           N+D      + +   D  VC +++  +  YG + G  +Y A
Sbjct: 231 NRDSWALNEFVKYNKDFFVCQSFAKNMGLYGERTGCMHYVA 271


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +3

Query: 87  VVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYN 206
           + K +    +YQ   K + E  T  Y RK+ +++ + K N
Sbjct: 485 IEKEEGELTKYQTLVKSKTEILTQLYTRKKQLLEQQGKGN 524


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,935,193
Number of Sequences: 5004
Number of extensions: 39641
Number of successful extensions: 112
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)