Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0783
(473 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626... 151 2e-37
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679... 149 1e-36
01_01_0182 - 1561779-1561873,1561977-1562050,1562140-1562207,156... 28 3.3
08_02_1410 - 26876243-26876497,26877129-26877239,26877240-268773... 28 4.4
05_07_0050 + 27332855-27333009,27333725-27333790,27333971-273340... 27 5.8
03_03_0279 - 16134422-16134608,16134703-16134947,16135046-161353... 27 5.8
02_04_0381 - 22497519-22497769,22498157-22498247 27 5.8
06_03_0957 + 26307062-26308987 27 7.7
03_02_0948 - 12645972-12646010,12646612-12646750,12646846-126470... 27 7.7
>01_06_1659 +
38961637-38961639,38962361-38962433,38962531-38962613,
38962732-38962858,38962950-38963029,38963112-38963228,
38963393-38963527,38963714-38963883,38963970-38964087
Length = 301
Score = 151 bits (367), Expect = 2e-37
Identities = 70/101 (69%), Positives = 81/101 (80%)
Frame = +3
Query: 75 GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 254
GFVK K YFKR+QVKFKRRR+GKTDY AR RL QDKNKYNTPKYR + +NKD+T
Sbjct: 3 GFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59
Query: 255 CQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTG 377
Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAAY TG
Sbjct: 60 AQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTG 100
>01_06_1660 +
38966999-38967001,38967685-38967757,38967841-38967923,
38968042-38968168,38968260-38968339,38968428-38968544,
38968711-38968845,38969046-38969215,38969300-38969417
Length = 301
Score = 149 bits (361), Expect = 1e-36
Identities = 69/101 (68%), Positives = 80/101 (79%)
Frame = +3
Query: 75 GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 254
GFVK K Y KR+QVKFKRRR+GKTDY AR RL QDKNKYNTPKYR + +NKD+T
Sbjct: 3 GFVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59
Query: 255 CQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTG 377
Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAAY TG
Sbjct: 60 AQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTG 100
>01_01_0182 -
1561779-1561873,1561977-1562050,1562140-1562207,
1562279-1562371,1562521-1562604,1562697-1562752,
1562843-1562950,1563051-1563225,1563237-1563422
Length = 312
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = -1
Query: 263 HLACYIFVGETHNQTIFRCVIFVLVLNNEAFTSIIISFPFTTPLEFYLVPLEVLFVLHNF 84
HL Y + + ++ FR +NN +TS ++++ T+P Y + +LF+ H
Sbjct: 113 HLCSYTYDRDCKDEDSFRGRCVAGAINN--YTSQLLTYDATSPSTQYNLTQALLFLAHFV 170
Query: 83 NESH 72
+ H
Sbjct: 171 GDIH 174
>08_02_1410 -
26876243-26876497,26877129-26877239,26877240-26877324,
26877620-26877672,26878318-26878440,26878514-26878597,
26878708-26878773,26879512-26879584,26879854-26879888,
26879970-26880212
Length = 375
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +3
Query: 198 KYNTPKYRLIVRLSNKDVTCQVAYSRI--EGDHIVCAAYSHEL 320
+YNT +YR + +S K V C+ + + E DH+ A S L
Sbjct: 274 RYNTSRYRELPHISIKCVFCKASVEPMGEESDHVHIIALSDAL 316
>05_07_0050 +
27332855-27333009,27333725-27333790,27333971-27334030,
27334425-27334515,27334893-27335073,27336037-27336128,
27336672-27336995
Length = 322
Score = 27.5 bits (58), Expect = 5.8
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = -1
Query: 251 YIFVGETHN-QTIFRCVIFVLVLNNEAFTSIIISFPFTTPLEFYLVPLEVLFVLHNFNE 78
Y F+G Q +F CV+F+ V N F + P PL Y + L L + E
Sbjct: 234 YPFMGPLRFVQVLFLCVVFMTVELNTFFLKFCLWIPPRNPLVVYRLILWWLIAIPTIRE 292
>03_03_0279 -
16134422-16134608,16134703-16134947,16135046-16135364,
16135451-16135675,16135780-16135946,16136030-16136146,
16136234-16136407,16136489-16136584,16136669-16136885,
16137005-16137123,16137249-16137441,16137562-16137713,
16137809-16137938,16138667-16138776
Length = 816
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -2
Query: 259 WHVTSLLERRTIRRYLGVLY 200
W S LERR RRYL +LY
Sbjct: 775 WKYVSNLERRETRRYLEMLY 794
>02_04_0381 - 22497519-22497769,22498157-22498247
Length = 113
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 329 WCEGWSDKLCCSIFNWSAISTKTASK 406
+C+G+ DK CC +WS K SK
Sbjct: 90 YCDGYDDKSCCD--DWSGDCHKCCSK 113
>06_03_0957 + 26307062-26308987
Length = 641
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 372 LNMLQHNLSDQPSHHNVATHVNKQRTQYGHLQSES 268
L +L L D+P HH V T +R Q H++ E+
Sbjct: 462 LGLLLSELCDEPWHHRVITF--SERPQLHHIKGET 494
>03_02_0948 -
12645972-12646010,12646612-12646750,12646846-12647090,
12647184-12647505,12647781-12648005,12648185-12648351,
12648428-12648544,12648989-12649162,12649372-12649467,
12649624-12649840,12650267-12650385,12650478-12650670,
12651212-12651363,12651485-12651611,12651731-12651828
Length = 809
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 259 WHVTSLLERRTIRRYLGVLYL 197
W S LERR RRYL + Y+
Sbjct: 771 WKYVSKLERRETRRYLEMFYI 791
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,740,798
Number of Sequences: 37544
Number of extensions: 254909
Number of successful extensions: 542
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -