Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0783
         (473 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S...   150   4e-37
At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso...   149   7e-37
At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family pr...    28   2.8  
At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family pr...    28   2.8  
At4g02280.1 68417.m00309 sucrose synthase, putative / sucrose-UD...    27   6.5  
At5g48770.1 68418.m06035 disease resistance protein (TIR-NBS-LRR...    27   8.6  
At5g35753.1 68418.m04282 expressed protein                             27   8.6  

>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
           ribosomal protein L5 GB:P49625 from [Oryza sativa]
          Length = 301

 Score =  150 bits (364), Expect = 4e-37
 Identities = 67/102 (65%), Positives = 81/102 (79%)
 Frame = +3

Query: 72  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 251
           M FVK  K+  YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+
Sbjct: 1   MVFVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60

Query: 252 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTG 377
             Q+  + I GD +  +AY+HELP+YG+ VGLTNYAAAY TG
Sbjct: 61  VAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTG 102


>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
           protein L5, rice
          Length = 301

 Score =  149 bits (362), Expect = 7e-37
 Identities = 67/102 (65%), Positives = 81/102 (79%)
 Frame = +3

Query: 72  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 251
           M FVK  K+  YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+
Sbjct: 1   MVFVKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60

Query: 252 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTG 377
             Q+  + I GD +  +AY+HELP+YG+ VGLTNYAAAY TG
Sbjct: 61  VAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTG 102


>At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 302

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 14/58 (24%), Positives = 32/58 (55%)
 Frame = +3

Query: 90  VKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 263
           VKN  + +   ++ KR+ EGKT+   +K++  +D+ +   P  +    +SN + + ++
Sbjct: 79  VKNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETE---PSMKGKSNMSNTETSSEI 133


>At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 304

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 14/58 (24%), Positives = 32/58 (55%)
 Frame = +3

Query: 90  VKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 263
           VKN  + +   ++ KR+ EGKT+   +K++  +D+ +   P  +    +SN + + ++
Sbjct: 79  VKNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETE---PSMKGKSNMSNTETSSEI 133


>At4g02280.1 68417.m00309 sucrose synthase, putative / sucrose-UDP
           glucosyltransferase, putative strong similarity to
           sucrose synthase GI:6682841 from [Citrus unshiu]
          Length = 809

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 259 WHVTSLLERRTIRRYLGVLYL 197
           W   S LERR  RRYL + Y+
Sbjct: 773 WKYVSKLERRETRRYLEMFYI 793


>At5g48770.1 68418.m06035 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1190

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = -1

Query: 188 LNNEAFTSIIISFPFTTPLEFYLVPLEVLFVLHNFNESHILNLSYKVASTD 36
           +    F  +++S  +TT   + L+ L+++  L+N  +  +L L Y+V  +D
Sbjct: 65  IEGSKFAVVVLSERYTTS-RWCLMELQLIMELYNLGKLKVLPLFYEVDPSD 114


>At5g35753.1 68418.m04282 expressed protein
          Length = 592

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 138 RREGKTDYYARKRL-VVQDKNKYNTPKYRLIVRLSNKDVTCQ 260
           RR G+ DYY +KRL        Y   +Y  + +  NK ++C+
Sbjct: 79  RRSGEIDYYLQKRLDTFWTVCTYCKVQYEYLRKYVNKRLSCK 120


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,130,894
Number of Sequences: 28952
Number of extensions: 205203
Number of successful extensions: 490
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)