Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0782
(618 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom... 27 2.2
SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz... 27 2.2
SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 3.8
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc... 26 3.8
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 5.0
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 25 6.6
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 25 6.6
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 25 8.8
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi... 25 8.8
SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|ch... 25 8.8
>SPAC16A10.08c |mug74|SPAC589.01c|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 285
Score = 27.1 bits (57), Expect = 2.2
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 289 SKAESKCSNESRFFTILIIYRENASPQLFGSYFTFIYT 402
S+AE C + L YREN SP L+GS + ++T
Sbjct: 139 SEAEKSCDFYGQ---PLHFYRENTSPCLYGSSLSNVFT 173
>SPBC1A4.06c |||mitochondrial matrix protein import
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 27.1 bits (57), Expect = 2.2
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +3
Query: 198 MLKYITAKWLYRHSYS 245
+L+Y T +W+ RHSYS
Sbjct: 13 ILRYSTKRWMNRHSYS 28
>SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 351
Score = 26.2 bits (55), Expect = 3.8
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Frame = +2
Query: 341 SFIEKTLHHNYLVRISRSYIHVP*HFCFSEINMSIHYFTK-----LFENKFK*GYQKNKS 505
SF EK Y +++ + H + N +IH FTK + +K K Y S
Sbjct: 27 SFAEKVQRFRYQMKVHAAPRQKTLHSFLKKDNANIHDFTKVEKPHIRSSKSKVSYNSITS 86
Query: 506 HVYEY-KTKQNSI 541
V +Y + K NS+
Sbjct: 87 RVTKYFEEKNNSV 99
>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 919
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 284 VTQKQNRNAVMNHVFLRSLSFIEKTLHHNYLVRISR 391
+ Q QNR V N + F+E +L N+L+ ++R
Sbjct: 776 IAQGQNRGIVQNFGVQDEVLFLEISLTENWLIFVTR 811
>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 172
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = -3
Query: 574 FVRKLDSV*NLDRILFSFVFVYMAFVFLIPLLEFIFKKF 458
FV +L N D +FS +F ++ + ++PL F++ ++
Sbjct: 32 FVEQLRLTNNRDNRMFSIIFSFLYLLLIVPL--FLYPEY 68
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 284 VTQKQNRNAVMNHVFLRSLSFIEKTLHHNYLVRISR 391
+ Q QNR V N + F++ +L N+L+ I+R
Sbjct: 864 IAQGQNRGIVQNFGVQDEVLFLQISLTENWLIFITR 899
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 330 YDPYHLSRKRFTTIIWFV-FHVHIYMF 407
Y PYH + K FT IW + F + +M+
Sbjct: 696 YTPYHPNEKLFTAGIWTIHFGLDNFMY 722
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +3
Query: 450 ISQNFLKINSSRGIKKTKAMYTNTKLNKILSKFQTLSSFLTKP 578
IS+N +N +R +K+ Y + K + + SK ++ + +KP
Sbjct: 410 ISENNELLNENRVLKEKLQTYLDKKESNVTSKIKSTAENSSKP 452
>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 970
Score = 25.0 bits (52), Expect = 8.8
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = -1
Query: 147 YIVMDTKLFYHSVDA 103
Y++ D+ +FYH +DA
Sbjct: 84 YLIPDSNIFYHCIDA 98
>SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 25.0 bits (52), Expect = 8.8
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +2
Query: 281 YVTQKQNRNAVMNHVFLRSLSFIEKTLHH-NYLVRISRSYIHVP*HFCFSEINMSIHYFT 457
Y+T+ N VFL L ++++ +HH ++ V I+ IH F + + +F+
Sbjct: 85 YLTRILKYCPATNDVFLSVLIYLDRIVHHFHFTVFINSFNIH---RFLIAGFTAASKFFS 141
Query: 458 KLF 466
+F
Sbjct: 142 DVF 144
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,563,987
Number of Sequences: 5004
Number of extensions: 52970
Number of successful extensions: 134
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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