Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0781
         (485 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    29   0.28 
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    28   0.86 
SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase Ark1|Schizosa...    27   1.1  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.5  
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   2.6  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    26   3.5  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    25   6.1  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   8.0  
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    25   8.0  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 29.5 bits (63), Expect = 0.28
 Identities = 21/49 (42%), Positives = 29/49 (59%)
 Frame = -3

Query: 408 TYTLFAILSSTPLIDRRSRLLLANSVRIASSSGKPIAFKSSSWVSPSEA 262
           TY+   I SS+ L+   S L++++S  +ASSS  PI   SSS VS   A
Sbjct: 665 TYSSSVIPSSSTLVSSSSSLIVSSS-PVASSSSSPIP-SSSSLVSTYSA 711


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 0.86
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 338 FASKSRDLRSIKGVELKMANKVYVHDGGKLDE 433
           FA + ++L   KGV+L M +   +HDG  L +
Sbjct: 79  FALRMKELADFKGVDLLMVDTGDLHDGNGLSD 110


>SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase
           Ark1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 11/54 (20%), Positives = 29/54 (53%)
 Frame = +3

Query: 21  AGIRHEGHSRDAGHKHEDNHLFVYYRHRGNGSRHKSL*CAQKWKR*LHSQNVYR 182
           + +RH+   R  GH H++  +++     G G  ++ L  A+++   + S+ +++
Sbjct: 142 SNLRHKNILRLYGHFHDEKRIYLILEFAGRGELYQHLRRAKRFSEEVASKYIFQ 195


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 18/71 (25%), Positives = 31/71 (43%)
 Frame = -3

Query: 474 TSELKTSXETTAKXXXXXXXX*TYTLFAILSSTPLIDRRSRLLLANSVRIASSSGKPIAF 295
           TS + TS  ++A               ++ SS+ +    S +L ++S    SSS      
Sbjct: 7   TSSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPL 66

Query: 294 KSSSWVSPSEA 262
            SSS+ SP+ +
Sbjct: 67  SSSSFTSPASS 77


>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 481

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +1

Query: 124 NLSNVLKNGNDNFTARMFTEVVKNNPGXKRCPLGI 228
           N  N+LK  ND   AR +TE V      K  P GI
Sbjct: 56  NSQNLLKQLNDEMKARKYTETVATFSSLK--PFGI 88


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +3

Query: 51  DAGHKHEDNHLFVYYRHRGNGSRHKSL*CAQKW 149
           D   K E   +F YY  R  GS  +   CA  W
Sbjct: 653 DMSWKKEVRRIFQYYTDRTQGSSIEEKRCAMTW 685


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 8/27 (29%), Positives = 19/27 (70%)
 Frame = -1

Query: 443 LQNSRLVFHHHERILYSPF*AQRL*LI 363
           L+    +++ H ++++SPF +QR+ L+
Sbjct: 901 LEKQWTLYYSHSKLMFSPFSSQRIILL 927


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = -2

Query: 424  FSTIMNVYFIRHFKLNAFN*SKITAFTREFCSYSIVVREAD 302
            F  ++N YF+ +   NA    ++   T ++C   ++ R+A+
Sbjct: 1072 FLEVLNSYFMSNTDSNAKRLQQLRRMTMDYCKRMLLDRKAN 1112


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
 Frame = -3

Query: 192 FHYFGKHSGCEVIVS---IFEHIREICDGCHCRDGDSKQTNDCLH 67
           F  FG+H  CEV+++   +     EI  G H  D D  +    LH
Sbjct: 59  FWRFGRHKSCEVVLNGPRVSNFHFEIYQG-HRNDSDESENVVFLH 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,914,864
Number of Sequences: 5004
Number of extensions: 36235
Number of successful extensions: 103
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)