Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0781
(485 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g06940.1 68418.m00784 leucine-rich repeat family protein cont... 28 2.9
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 28 3.8
At1g72410.1 68414.m08374 COP1-interacting protein-related simila... 28 3.8
At5g42740.1 68418.m05205 glucose-6-phosphate isomerase, cytosoli... 27 5.1
At2g02750.1 68415.m00218 pentatricopeptide (PPR) repeat-containi... 27 5.1
At5g03730.2 68418.m00334 serine/threonine protein kinase (CTR1) ... 27 6.7
At5g03730.1 68418.m00333 serine/threonine protein kinase (CTR1) ... 27 6.7
At2g43210.2 68415.m05371 UBX domain-containing protein contains ... 27 6.7
At2g43210.1 68415.m05370 UBX domain-containing protein contains ... 27 6.7
At1g60770.1 68414.m06841 pentatricopeptide (PPR) repeat-containi... 27 6.7
At1g27580.1 68414.m03361 F-box family protein similar to F-box p... 27 6.7
At2g43970.2 68415.m05468 La domain-containing protein contains P... 27 8.9
At2g43970.1 68415.m05467 La domain-containing protein contains P... 27 8.9
At1g78980.1 68414.m09209 leucine-rich repeat transmembrane prote... 27 8.9
At1g78920.1 68414.m09201 vacuolar-type H+-translocating inorgani... 27 8.9
>At5g06940.1 68418.m00784 leucine-rich repeat family protein
contains protein kinase domain, Pfam:PF00069; contains
leucine-rich repeats, Pfam:PF00560
Length = 872
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 21 AGIRHEGHSRDAGHKHEDNHLFVYYRHRGNGSRHKSL 131
A IRH+ +R G +D +F+ Y NGS H L
Sbjct: 638 AKIRHKNITRILGFCFKDEMIFLIYEFTQNGSLHDML 674
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 27.9 bits (59), Expect = 3.8
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +3
Query: 42 HSRDAGHKHEDNHLFVYYRHRGNGSRHKS 128
H D H H+ NH ++ H G+ H S
Sbjct: 312 HDHDHDHHHDHNHDHDHHHHDGHDHHHHS 340
>At1g72410.1 68414.m08374 COP1-interacting protein-related similar
to COP1-Interacting ProteinI 7 (CIP7) [Arabidopsis
thaliana] GI:3327870
Length = 1163
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 213 TLXPWIIFHYFGKHSGCEVIVSIFEHIREICDG 115
T+ +++F KHS CE+ VS E ++ G
Sbjct: 5 TVLDYVVFELSPKHSKCELFVSSNEQTEKLASG 37
>At5g42740.1 68418.m05205 glucose-6-phosphate isomerase, cytosolic
(PGIC) identical to SP|P34795 Glucose-6-phosphate
isomerase, cytosolic (EC 5.3.1.9) (GPI) (Phosphoglucose
isomerase) (PGI) (Phosphohexose isomerase) (PHI)
{Arabidopsis thaliana}; contains Pfam profile PF00342:
glucose-6-phosphate isomerase
Length = 560
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 137 TLERFVTAAIAAMAIVNKQMIVFMFVACVSRMSLVPNS 24
TL ++TAA+ A A+ + V +A V + + PN+
Sbjct: 227 TLREWITAALGASAVAKHMVAVSTNLALVEKFGIDPNN 264
>At2g02750.1 68415.m00218 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 613
Score = 27.5 bits (58), Expect = 5.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 183 FGKHSGCEVIVSIFEHIRE 127
+GKH CE + IFE +RE
Sbjct: 446 YGKHGECESAIEIFELLRE 464
>At5g03730.2 68418.m00334 serine/threonine protein kinase (CTR1)
identical to serine/threonine-protein kinase CTR1
[Arabidopsis thaliana] SWISS-PROT:Q05609
Length = 821
Score = 27.1 bits (57), Expect = 6.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 293 LKAIGFPDDDAIRTEFASKSRDLR 364
++++GFP DD R F DLR
Sbjct: 121 IESVGFPQDDGFRLGFGGGGGDLR 144
>At5g03730.1 68418.m00333 serine/threonine protein kinase (CTR1)
identical to serine/threonine-protein kinase CTR1
[Arabidopsis thaliana] SWISS-PROT:Q05609
Length = 821
Score = 27.1 bits (57), Expect = 6.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 293 LKAIGFPDDDAIRTEFASKSRDLR 364
++++GFP DD R F DLR
Sbjct: 121 IESVGFPQDDGFRLGFGGGGGDLR 144
>At2g43210.2 68415.m05371 UBX domain-containing protein contains
Pfam profile PF00789: UBX domain
Length = 531
Score = 27.1 bits (57), Expect = 6.7
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = -3
Query: 384 SSTPLIDRRSRLLLANSVRIASSSGKPIAFKSSSWVSPSEAKAN*ARGGSTENAERT 214
S TP+ S +L SV + ++ P ++S V PSE K+ +TEN + T
Sbjct: 138 SETPVSSASSVVLPPGSVPLDAAVASP---STASSVQPSETKSTVTSASTTENNDGT 191
>At2g43210.1 68415.m05370 UBX domain-containing protein contains
Pfam profile PF00789: UBX domain
Length = 531
Score = 27.1 bits (57), Expect = 6.7
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = -3
Query: 384 SSTPLIDRRSRLLLANSVRIASSSGKPIAFKSSSWVSPSEAKAN*ARGGSTENAERT 214
S TP+ S +L SV + ++ P ++S V PSE K+ +TEN + T
Sbjct: 138 SETPVSSASSVVLPPGSVPLDAAVASP---STASSVQPSETKSTVTSASTTENNDGT 191
>At1g60770.1 68414.m06841 pentatricopeptide (PPR) repeat-containing
protein low similarity to DNA-binding protein [Triticum
aestivum] GI:6958202; contains Pfam profile PF01535: PPR
repeat
Length = 491
Score = 27.1 bits (57), Expect = 6.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 124 NLSNVLKNGNDNFTARMFTEVVK 192
NL +LKNG DN A +F +++
Sbjct: 431 NLLEILKNGTDNIGAEIFEPLIR 453
>At1g27580.1 68414.m03361 F-box family protein similar to F-box
protein family, AtFBX7 (GI:20197899) [Arabidopsis
thaliana]; confirmed by FLcDNA GI:16604421; contains
uncharacterized Arabidoppsis domain shared by 33
Arabidopsis proteins;simlar to unknown protein
GB:AAC63676
Length = 364
Score = 27.1 bits (57), Expect = 6.7
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 284 EELLKAIGFPDDDAIRTEFASKSRDLRSIKGVELKMANKVYV 409
EE +K + D+D R EF + DLR V+ K N V V
Sbjct: 96 EENVKHMLMDDEDPFRDEFPHAAEDLRGRLWVDDKNGNYVVV 137
>At2g43970.2 68415.m05468 La domain-containing protein contains Pfam
profile PF05383: La domain
Length = 529
Score = 26.6 bits (56), Expect = 8.9
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +3
Query: 15 RAAGIRHEGHSRDAGHKHEDNHLFVYYRHRGNGSRH 122
R G H+ +++ H H NH H G G+ H
Sbjct: 445 RGRGQPHQNQNQNNNHSHNQNH-----NHNGRGNHH 475
>At2g43970.1 68415.m05467 La domain-containing protein contains Pfam
profile PF05383: La domain
Length = 545
Score = 26.6 bits (56), Expect = 8.9
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +3
Query: 15 RAAGIRHEGHSRDAGHKHEDNHLFVYYRHRGNGSRH 122
R G H+ +++ H H NH H G G+ H
Sbjct: 461 RGRGQPHQNQNQNNNHSHNQNH-----NHNGRGNHH 491
>At1g78980.1 68414.m09209 leucine-rich repeat transmembrane protein
kinase, putative similar to leucine-rich repeat
transmembrane protein kinase 2 GI:3360291 from [Zea
mays]
Length = 693
Score = 26.6 bits (56), Expect = 8.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 27 IRHEGHSRDAGHKHEDNHLFVYYRHRGNGSRHKSL 131
IRH+ + G+ E H + Y + NGS H+ L
Sbjct: 448 IRHQNIAELVGYCSEQGHNMLVYEYFRNGSLHEFL 482
>At1g78920.1 68414.m09201 vacuolar-type H+-translocating inorganic
pyrophosphatase (AVPL1) identical to vacuolar-type
H+-translocating inorganic pyrophosphatase GI:6901676
from [Arabidopsis thaliana]
Length = 802
Score = 26.6 bits (56), Expect = 8.9
Identities = 21/71 (29%), Positives = 32/71 (45%)
Frame = -1
Query: 263 LKLTEREEAAPKMPRGQRFXPGLFFTTSVNILAVKLSFPFLSTLERFVTAAIAAMAIVNK 84
+ +R A P M R + + P +F I+ KL+ LS + F AI M
Sbjct: 13 MSFNDRPRAFPNM-RSKTYSPLIF-----RIIR-KLNVRVLSIILLFCFGAIFYMGASTS 65
Query: 83 QMIVFMFVACV 51
+IVF+F C+
Sbjct: 66 PIIVFVFTVCI 76
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,168,798
Number of Sequences: 28952
Number of extensions: 195784
Number of successful extensions: 712
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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