Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0780
         (530 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       24   0.96 
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   1.7  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   2.9  

>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 23.8 bits (49), Expect = 0.96
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 440 KVLSGGVPCNACAESCAGMSCGAGR 514
           K +    PC+   ESC  +  G+GR
Sbjct: 7   KAICDNPPCDDEVESCIAVGVGSGR 31


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 95  PLHRRRSRPMPRDTSDAAACPIGESPRA 12
           P H  R R + R TSD     +  SPRA
Sbjct: 217 PKHDGRGRIVERFTSDRVHAALVTSPRA 244


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 8/23 (34%), Positives = 10/23 (43%)
 Frame = +2

Query: 455 GVPCNACAESCAGMSCGAGRRCV 523
           G+ C    E C   SC  G  C+
Sbjct: 17  GINCQTNDEDCTETSCMNGGTCI 39


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,567
Number of Sequences: 336
Number of extensions: 1874
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12887571
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)