Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0780
         (530 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    25   9.3  
SPCC1393.11 |||mitochondrial ribosomal protein subunit L20|Schiz...    25   9.3  

>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 335 VSALRMTRAECCTGASRSPAAWSPKDYDSGEIFFYKVLSGGVPCNA 472
           + AL    +  C  +SR   A++      G   F K+  GG+P NA
Sbjct: 343 IIALCFNCSALCLASSREIFAFARDKGLPGSWIFRKLTPGGIPLNA 388


>SPCC1393.11 |||mitochondrial ribosomal protein subunit
           L20|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 197

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = -1

Query: 452 PREPCRRI---FRRYRNPWGSRRREIERPQYSIQ 360
           P+E  +++   F   +  WGS++REI R + S Q
Sbjct: 153 PKERIQKVEENFEAEKLAWGSKKREIRRQRASRQ 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,809,849
Number of Sequences: 5004
Number of extensions: 28174
Number of successful extensions: 65
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)