Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0780
(530 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0438 - 17737040-17737122,17737373-17737496,17737897-177381... 33 0.19
10_05_0040 - 8463585-8464396,8464664-8465273,8465708-8466169 32 0.25
04_01_0333 - 4391571-4392289,4393048-4393159 31 0.44
10_08_0267 - 16333239-16333820,16333904-16334842,16334920-163351... 31 0.58
01_06_1068 - 34270420-34270581,34272185-34272238,34273741-34274070 30 1.0
02_05_1081 + 33971950-33972606 30 1.3
12_02_0735 - 22636835-22639502,22639755-22640734 29 1.8
08_02_0239 - 14680013-14680291,14680560-14680649,14680654-146810... 29 1.8
07_03_0743 - 21118619-21119071 29 2.3
03_05_1099 - 30401847-30402197 29 2.3
07_01_0796 + 6265106-6265304,6265723-6265963,6266063-6266423 29 3.1
09_06_0090 + 20787453-20787507,20787600-20788296,20788949-20789189 28 4.1
08_02_0199 - 14160881-14161054,14161151-14161306,14161802-141619... 28 4.1
03_05_0883 + 28483429-28484385,28485090-28485398 28 5.4
04_03_0165 - 12170813-12170831,12171324-12171625 27 7.1
07_03_0702 + 20820796-20821495,20821569-20822119,20822254-20823018 27 9.4
02_04_0309 - 21924042-21925580 27 9.4
>11_04_0438 -
17737040-17737122,17737373-17737496,17737897-17738182,
17738265-17738397,17738742-17738953,17739455-17739816,
17739907-17739937,17744738-17745111
Length = 534
Score = 32.7 bits (71), Expect = 0.19
Identities = 21/69 (30%), Positives = 30/69 (43%)
Frame = +2
Query: 281 AAAGICWVGMDRAGRCSSVSALRMTRAECCTGASRSPAAWSPKDYDSGEIFFYKVLSGGV 460
AAA + V + R S +A +TR+ TG++ P A +P + I V GG
Sbjct: 17 AAAEVAAVCVGRGAAARSAAASVVTRSRPVTGSAVEPPASTPDTHHRSRIRVRGVRIGGR 76
Query: 461 PCNACAESC 487
C A C
Sbjct: 77 MCRPLASPC 85
>10_05_0040 - 8463585-8464396,8464664-8465273,8465708-8466169
Length = 627
Score = 32.3 bits (70), Expect = 0.25
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +2
Query: 311 DRAGRCSSVSALRMTRAECCTGASRSPAAWSP-KDYDSGEIFFYKVLSGGVPCNACAESC 487
+ A R + + + ECC+ P ++DS +FF ++ NAC E
Sbjct: 161 NHASRVITTTRIEKVAMECCSYRCEFIYKMKPLNEHDSRRLFFNRIFGSE---NACPERF 217
Query: 488 AGMSCGAGRRC 520
G+S G +RC
Sbjct: 218 KGVSTGILQRC 228
>04_01_0333 - 4391571-4392289,4393048-4393159
Length = 276
Score = 31.5 bits (68), Expect = 0.44
Identities = 16/29 (55%), Positives = 17/29 (58%)
Frame = +2
Query: 329 SSVSALRMTRAECCTGASRSPAAWSPKDY 415
S+ A R R CCTGA SPAA P DY
Sbjct: 210 SACDAYRSARY-CCTGAYGSPAACGPTDY 237
>10_08_0267 -
16333239-16333820,16333904-16334842,16334920-16335172,
16336837-16337063,16338189-16339388
Length = 1066
Score = 31.1 bits (67), Expect = 0.58
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +2
Query: 107 RRRGRGWVCAHVPAPGPHSATAARVE--RRAPHAPACDATGS 226
RRRGR W+ A AP P S R + + +P+C GS
Sbjct: 283 RRRGRRWLWAFAGAPRPGSTKTVRAQIIEQCTASPSCTHFGS 324
>01_06_1068 - 34270420-34270581,34272185-34272238,34273741-34274070
Length = 181
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +2
Query: 101 CCRRRGRGWVCAHVPAPGPHSATAARVERR 190
CCRRR RGW AH P A + RR
Sbjct: 64 CCRRRPRGW-AAHAWQPSVMETVTAALARR 92
>02_05_1081 + 33971950-33972606
Length = 218
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 143 PAPGPHSATAARVERRAPHAPA 208
P+P P +A AA V++RAP PA
Sbjct: 116 PSPAPVAAQAAAVDQRAPRVPA 137
>12_02_0735 - 22636835-22639502,22639755-22640734
Length = 1215
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = -1
Query: 470 HYTVLLPREPCRRIFR-RYRNPWGSRRREIERPQYSIQRGSCATQTLNCSAR 318
HYTV +P P R + E+ RPQ S G+ T LNC+ R
Sbjct: 81 HYTVHIPPTPDRATASVASEAEAAAEAEEVHRPQRSYISGTIFTGGLNCATR 132
>08_02_0239 -
14680013-14680291,14680560-14680649,14680654-14681047,
14682052-14682137,14683327-14683465,14683470-14683585
Length = 367
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 4 QESARGDSPIGQAAASDVSRGIGRLRRRCSGHLLQE 111
+E+AR + + A +RG G LRRRC G ++E
Sbjct: 54 EETARVAASAVEGGAGRGARGTGLLRRRCGGEEMRE 89
>07_03_0743 - 21118619-21119071
Length = 150
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 198 CGALRSTRAAVALCGPGAGTCAHTHPRPRLL 106
C A CG GAG+C+ + PRP +L
Sbjct: 49 CDACAPVGVGWGRCGDGAGSCSASCPRPAVL 79
>03_05_1099 - 30401847-30402197
Length = 116
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = -1
Query: 473 KHYTVLLPREPCRRIFRRYRNPWGSRRREIERPQYSIQRGSCATQTLNCSARRGPFPPSR 294
+HY V E CR + + +R RE++ P+ + Q G C C + PP
Sbjct: 17 RHYIV--EAERCRDCLESAKEEYWARGRELQVPRSAPQGGGCRGAHQGCRLQCRQAPPRS 74
Query: 293 S 291
S
Sbjct: 75 S 75
>07_01_0796 + 6265106-6265304,6265723-6265963,6266063-6266423
Length = 266
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 110 RRGRGWVCAHVPAPGPHSATAARVERRAPHA 202
+RGRG V + + PGP+ A+R + P+A
Sbjct: 149 KRGRGAVGSRMDEPGPYLNVASRSQENEPNA 179
>09_06_0090 + 20787453-20787507,20787600-20788296,20788949-20789189
Length = 330
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Frame = +2
Query: 278 PAAAGICWVGMDRAG-RCSSVSALRMTRAECCTGASRSPAAWSPKDY 415
P A + G D AG C S T CC GA +PA P Y
Sbjct: 163 PCPADLKVAGADGAGIACRSACEAFGTPEYCCNGAFGTPATCRPSAY 209
>08_02_0199 -
14160881-14161054,14161151-14161306,14161802-14161921,
14162046-14162143,14162969-14163041,14164472-14164619,
14165108-14165232,14165611-14165652,14165757-14166074,
14166633-14167559,14167584-14167852,14167946-14168255,
14169281-14169465,14170795-14170901,14171320-14171486
Length = 1072
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 149 PGPHSATAARVERRAPHAPACDAT 220
P PH+ A R R PHA A DA+
Sbjct: 9 PPPHALGATRQAPRCPHAAAADAS 32
>03_05_0883 + 28483429-28484385,28485090-28485398
Length = 421
Score = 27.9 bits (59), Expect = 5.4
Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Frame = -1
Query: 188 CARRGPPWHCXXXXXXXXXXXXXXXASCNK*PLHRRRSR-PMPRDTSDAAACP-IGESPR 15
C RR WHC S N PL RR R +P +S A+ P +PR
Sbjct: 23 CMRRRARWHCPADDAFLCQACDASVHSAN--PLARRHHRVRLPSASSSPASSPRSAAAPR 80
Query: 14 ADS 6
A S
Sbjct: 81 AGS 83
>04_03_0165 - 12170813-12170831,12171324-12171625
Length = 106
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 146 APGPHSATAARVERRAPHAPACDAT 220
+P PH+A AA + +R P P+ AT
Sbjct: 20 SPPPHAAPAAGLPQRTPRLPSAAAT 44
>07_03_0702 + 20820796-20821495,20821569-20822119,20822254-20823018
Length = 671
Score = 27.1 bits (57), Expect = 9.4
Identities = 32/90 (35%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Frame = +2
Query: 116 GRGWVCAHVPAPGPHSATAARVERRAPHAPACDATGSMRXXXXXXXXXXXXXXRPAAAGI 295
G G HV A H+A AA V APA AT + R R AA
Sbjct: 69 GNGNTALHVAATRGHAALAALV---CATAPALAATRN-RFLDTPLHCAAKSGHRDVAA-- 122
Query: 296 CWVG-MDRAGRCSSVSALRMTRAECCTGAS 382
C + M RAG +S +AL + RA C GA+
Sbjct: 123 CLLSEMLRAGGAAS-AALPLRRATNCLGAT 151
>02_04_0309 - 21924042-21925580
Length = 512
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +2
Query: 383 RSPAAWSPKDYDSGEIFFYKVLSGGVPCNACAESCAGMSCGAGRR 517
R PAAW D E F +K S P + + G+GRR
Sbjct: 406 RDPAAWESPDQFLPERFLHKEESSSPPLELRGKDYEYIPFGSGRR 450
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,409,160
Number of Sequences: 37544
Number of extensions: 317018
Number of successful extensions: 1317
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1315
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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