Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0780
         (530 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6)                33   0.11 
SB_53762| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_20126| Best HMM Match : TSP_1 (HMM E-Value=0.0041)                  29   2.4  
SB_27222| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_14143| Best HMM Match : Gelsolin (HMM E-Value=1.1e-07)              28   5.4  
SB_35926| Best HMM Match : Bac_DNA_binding (HMM E-Value=7.5)           27   7.2  
SB_19703| Best HMM Match : DUF1374 (HMM E-Value=2.8)                   27   7.2  
SB_32883| Best HMM Match : K-box (HMM E-Value=0.032)                   27   9.5  

>SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6)
          Length = 493

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 7/128 (5%)
 Frame = -3

Query: 510 PAPQDIPAHDSAQALHGTPPER--TL*KNISPLS*SL--GLQAAGDREAPVQHSARVM-- 349
           P P     H + +A H  P +      +  SPLS S    L  +  R  P   + R    
Sbjct: 187 PTPWSPTPHTTGRASHSIPRDEFGVPLEAPSPLSFSTLSPLATSSPRRTPPSFTPRSSIS 246

Query: 348 -RNADTELQRPARSIPTQQIPAAAGRXXXXXXXXXXXXXSRMLPVASHAGACGALRSTRA 172
            R +DT  +R   S+P ++  +A GR                   A+ AG   A RS+ +
Sbjct: 247 RRRSDTPKKRRRISVPRRRAGSAQGRITTKKKTPPRRANLLEALTAAAAGTPAASRSSSS 306

Query: 171 AVALCGPG 148
           +++L  PG
Sbjct: 307 SISLASPG 314


>SB_53762| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1010

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 362 ECCTGASRSPAAWSPKDYDSGEIFFYKVLSGGVPCNACAES 484
           + C    R+PA   P  Y +    FY+  SG   CNAC ++
Sbjct: 65  QSCAKPHRTPAHTHPLYYVNSSEVFYQSTSGVWRCNACLKT 105


>SB_20126| Best HMM Match : TSP_1 (HMM E-Value=0.0041)
          Length = 448

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 519 QRRPAPQDIPAHDSAQALHGTPPE 448
           +R PAP DIPA  +     G PPE
Sbjct: 48  RRLPAPNDIPAFQAGNPFLGYPPE 71


>SB_27222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 21/55 (38%), Positives = 23/55 (41%)
 Frame = -1

Query: 452 PREPCRRIFRRYRNPWGSRRREIERPQYSIQRGSCATQTLNCSARRGPFPPSRSR 288
           P    RRI RR R   G  R EI +   S    SC  + L     R  FPP R R
Sbjct: 52  PNWRIRRITRRKRTLNGENRPEIIQETCSHYPTSCLPKWLFVVRMRKVFPPCRVR 106


>SB_14143| Best HMM Match : Gelsolin (HMM E-Value=1.1e-07)
          Length = 546

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 380 SRSPAAWSPKDYDSGEIFFYKVLSGG-VPCNACAE 481
           S  P A+   D  S E+ FY+V  GG V CN  A+
Sbjct: 144 SGPPDAFKEDDGRSKEVGFYRVTDGGKVQCNTAAK 178


>SB_35926| Best HMM Match : Bac_DNA_binding (HMM E-Value=7.5)
          Length = 380

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -3

Query: 147 AGTCAHTHPRPR 112
           AG C H HPRPR
Sbjct: 256 AGLCGHVHPRPR 267


>SB_19703| Best HMM Match : DUF1374 (HMM E-Value=2.8)
          Length = 469

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 467 YTVLLPREPCRRIFRRYRNPWGSR 396
           Y +  P +PC RIF  +R+P+  +
Sbjct: 314 YNIWAPLQPCFRIFYLFRSPYADK 337


>SB_32883| Best HMM Match : K-box (HMM E-Value=0.032)
          Length = 192

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 395 RREIERPQYSIQRGSCATQTLNCSARR 315
           R EI R  YSI + +   Q+LNC A++
Sbjct: 32  RDEILRLDYSIAQSNVRQQSLNCEAKK 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,201,994
Number of Sequences: 59808
Number of extensions: 303455
Number of successful extensions: 1029
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)