Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0780
         (530 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.9  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   3.4  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   3.4  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   3.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   5.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   5.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.9  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   7.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 349 AQRRH*TAAPGAVHSHPADPG 287
           A  R   A+  + HSHP +PG
Sbjct: 632 AMERERDASLSSTHSHPHEPG 652


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 67  IGRLRRRCSGHL 102
           IGRL+R CSG +
Sbjct: 53  IGRLKRTCSGDI 64


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +1

Query: 7   ESARGDSPIGQAAASDVSRGIG 72
           +S+ GDSP+   +++ +  G G
Sbjct: 68  DSSSGDSPVSSHSSNGIHTGFG 89


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 67  IGRLRRRCSGHL 102
           IGRL+R CSG +
Sbjct: 53  IGRLKRTCSGDI 64


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 386 SPAAWSPKDYD 418
           SP  WSP D D
Sbjct: 516 SPTTWSPADLD 526


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 76  ADRCRATHPTPLLALSESRLV 14
           AD+ +A+ P   LAL + RL+
Sbjct: 167 ADKKKASAPLQQLALQQQRLI 187


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 110 RRGRGWVCAHVPAPGP 157
           R+GRG + A+ P  GP
Sbjct: 193 RKGRGAIGAYGPEKGP 208


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = -1

Query: 521 RNGVRRRKTFRHMILHKHYTVLLPREPCRRIFRRYR-NPWGSRRREIERPQY 369
           RN   R+K  R+  LH     LL     R+ + R R     S + E E  +Y
Sbjct: 8   RNREYRKKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQNSYKNEREYRKY 59


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = +2

Query: 479 ESCAGMSCGAGRRC 520
           + CA   CG G+ C
Sbjct: 80  DPCASKYCGIGKEC 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,807
Number of Sequences: 438
Number of extensions: 2476
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)