Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0780
         (530 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g45530.1 68416.m04917 DC1 domain-containing protein contains ...    28   3.4  
At1g75050.1 68414.m08717 thaumatin-like protein, putative / path...    28   3.4  
At1g75030.1 68414.m08715 pathogenesis-related thaumatin family p...    28   3.4  
At3g27670.1 68416.m03455 expressed protein                             27   7.9  

>At3g45530.1 68416.m04917 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 692

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 347 RMTRAECCTGASRSPAAWSPKDYDSGEIF 433
           R TR  C +  SR P ++  K YD GE++
Sbjct: 613 RSTRPLCNSCHSRCPGSFIMKSYDGGEVY 641


>At1g75050.1 68414.m08717 thaumatin-like protein, putative /
           pathogenesis-related protein, putative similar to
           thaumatin-like protein [Arabidopsis thaliana]
           GI:2435406, SP|P28493 Pathogenesis-related protein 5
           precursor (PR-5) {Arabidopsis thaliana}; contains Pfam
           profile: PF00314 Thaumatin family
          Length = 257

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 326 CSSVSALRMTRAECCTGASRSPAAWSPKDYDS 421
           C S  A   +   CCTGA  +P   SP  Y +
Sbjct: 189 CKSACAAFNSEEFCCTGAHATPQTCSPTHYSA 220


>At1g75030.1 68414.m08715 pathogenesis-related thaumatin family
           protein identical to thaumatin-like protein [Arabidopsis
           thaliana] GI:2435406; contains Pfam profile: PF00314
           Thaumatin family
          Length = 246

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +2

Query: 326 CSSVSALRMTRAECCTGASRSPAAWSPKDYDS 421
           C S  A   +   CCTGA  +P   SP  Y S
Sbjct: 178 CKSACAAFSSPEFCCTGAHATPQTCSPTYYSS 209


>At3g27670.1 68416.m03455 expressed protein
          Length = 1841

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 168  VALCGPGAGTCAHTHPRPR 112
            V + G GAG   ++HPRPR
Sbjct: 1289 VNVLGAGAGNLVYSHPRPR 1307


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,449,761
Number of Sequences: 28952
Number of extensions: 182084
Number of successful extensions: 497
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)