Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0779
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    31   0.15 
SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy...    28   1.1  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    27   1.4  
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    27   2.5  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    26   4.4  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    26   4.4  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   7.7  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 30.7 bits (66), Expect = 0.15
 Identities = 21/62 (33%), Positives = 36/62 (58%)
 Frame = -3

Query: 262 EARISSAKSCHGTSDGVKTFLPGMSLAV*NPTTPWSFNASDSSKPSISPRHTSDNTKATW 83
           +++ SS+KS H +S G+++     S+A+ NPT+  S  +S SS  S     + D+TK   
Sbjct: 325 KSKHSSSKSSHDSSQGLEST---SSIAL-NPTSSISSTSSSSSTSSAISTISQDHTKTVT 380

Query: 82  TV 77
           +V
Sbjct: 381 SV 382


>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 36  GEVKYACDVYTGPRTVHVAFV 98
           G++KY CDVY G  +   AF+
Sbjct: 311 GKIKYKCDVYDGLESAPEAFI 331


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
 Frame = -3

Query: 172 PTTPWSFNASDS-SKPSISP-RH--TS----DNTKATWTVLGPVYTSHAYFTSPEHCASC 17
           PTTP SFN  +S S+ S SP +H  TS    D T      LG + T H    S +H  S 
Sbjct: 557 PTTPPSFNVGESLSRRSASPLQHPRTSPDMLDKTSPCKRGLGTITTVHKKHGSVDHLPSV 616

Query: 16  R 14
           +
Sbjct: 617 K 617


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 57  DVYTGPRTVHVAFVLSD-VCLGEIEGFDESEALKLQGVVGFYTAKDI 194
           D+  GP   ++   L+  +CL +I+  DE    KL   VGF+  K I
Sbjct: 63  DIVLGPTMRNLKEKLAGGLCLEDIQNIDEVSLNKLIEKVGFHNRKTI 109


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 278 VRDFLRSQDLFSEVLPRHV*RCEDVL 201
           V DF+ + D F+EV P+H     D+L
Sbjct: 683 VNDFVEAADGFAEVFPQHKYAVVDIL 708


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 49  MRVTCTRGQGLSMSPSCYPTCALARLKASTNP 144
           MR +C    G + SPSCY   +L +   + +P
Sbjct: 392 MRQSCISPSGTNFSPSCYSPESLMQQPLTLSP 423


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +3

Query: 471 DTRHVIKGSFSMPSQYHYTMETQSCTVAVTS 563
           +TR+    S S P  YH  +    CT  V S
Sbjct: 637 NTRYRFTASRSSPGSYHLFLNGSRCTAGVRS 667


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,193,692
Number of Sequences: 5004
Number of extensions: 41457
Number of successful extensions: 122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)