Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0779
         (564 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical ...    94   7e-20
Z83318-1|CAB05902.1| 1358|Caenorhabditis elegans Hypothetical pr...    82   2e-16
U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical p...    53   4e-09
U40947-5|AAC48070.1|  505|Caenorhabditis elegans Inward rectifyi...    29   2.3  
AF039713-6|AAB96723.1|  829|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z74029-1|CAA98431.1|  293|Caenorhabditis elegans Hypothetical pr...    27   7.0  
EF472000-1|ABQ96385.1| 1142|Caenorhabditis elegans SMG-3 protein.      27   7.0  
AC084197-22|AAK68590.2| 1142|Caenorhabditis elegans Suppressor w...    27   7.0  

>AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical
            protein F15E6.6 protein.
          Length = 1228

 Score = 93.9 bits (223), Expect = 7e-20
 Identities = 67/179 (37%), Positives = 97/179 (54%), Gaps = 4/179 (2%)
 Frame = +3

Query: 18   HEAQCSGEVKYACDVYTGPRTVHVAFVLSDVCLGEIEGFDESEALKLQGVVGFYTAKDIP 197
            +E   +GE  Y  D+ T    VH+ FVLS V   EI   D +EALKL+GVVGF+ A D+P
Sbjct: 523  NERAITGEALYVNDIQTY-NPVHLGFVLSTVPHAEILSIDATEALKLEGVVGFFGASDVP 581

Query: 198  GKNV--FTPSDVPWQDFAEEILASKKISYYGQPVALIAATTHRLVLTAANLVRVKYKKSN 371
            G N      S++   D A  I A KK+   GQ V +IAA    L   AA LV+++YK+  
Sbjct: 582  GNNSPGLQISNMNLPDDA-TIFADKKVESVGQVVGVIAANDVLLARRAAKLVKLEYKELP 640

Query: 372  AVPVLSIQEALVAADKEQRVRQ--EVAIKATSKGSDTRHVIKGSFSMPSQYHYTMETQS 542
            A  ++ +++A+VA     +VR   +           +  V++G  S+ SQ H+ +ETQS
Sbjct: 641  A--LVELKDAIVAKSLLGKVRHFGKSEYLVNESLVHSYKVLEGESSLGSQEHFYLETQS 697


>Z83318-1|CAB05902.1| 1358|Caenorhabditis elegans Hypothetical protein
            F55B11.1 protein.
          Length = 1358

 Score = 82.2 bits (194), Expect = 2e-16
 Identities = 61/182 (33%), Positives = 91/182 (50%), Gaps = 9/182 (4%)
 Frame = +3

Query: 33   SGEVKYACDVYTGPRTVHVAFVLSDVCLGEIEGFDESEALKLQGVVGFYTAKDI-PGKNV 209
            +GE  Y CD        H+AFVLS +  G +   D + AL++ GVVG   A D+  G  +
Sbjct: 610  TGEAVY-CDDINVADCNHIAFVLSPIAHGTLNSIDYTAALEIDGVVGTIDASDVTTGAQM 668

Query: 210  FTPSDVPWQDFAEEILASKKISYYGQPVALIAATTHRLVLTAANLVRVKYKKSNAVPVLS 389
               SD P       +   + I+++GQP+A I AT H +   AA+LV++ Y  S   P+++
Sbjct: 669  GHHSDTP-------VFVKETITFHGQPIAAIVATDHEIARKAASLVKLDY--SVEKPIVT 719

Query: 390  IQEALVAAD---KEQRVR-----QEVAIKATSKGSDTRHVIKGSFSMPSQYHYTMETQSC 545
            I++AL A     K   +       E  IK  S  S    +++GS  M  Q H+ +ETQ C
Sbjct: 720  IKQALEAESFVFKHFVIHSSLNDNEQVIK--SDWSKYDRIVEGSIDMGGQEHFYLETQQC 777

Query: 546  TV 551
             V
Sbjct: 778  IV 779


>U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical
           protein B0222.9 protein.
          Length = 1217

 Score = 52.8 bits (121), Expect(2) = 4e-09
 Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
 Frame = +3

Query: 18  HEAQCSGEVKYACDVYTGPRTVHVAFVLSDVCLGEIEGFDESEALKLQGVVGFYTAKDIP 197
           +E   +GE  Y  D+      VH+ FVLS V   EI   D SEAL+L+GV G++   D+P
Sbjct: 525 NERAITGEAFYVNDIQAY-NAVHLGFVLSTVPHAEITKIDVSEALQLEGVAGYFGVSDVP 583

Query: 198 GKNVFTPS-DVPWQDFAEE--ILASKK 269
           G N  TP   +   +F ++  I A KK
Sbjct: 584 GNN--TPGLQISNMNFPDDTTIFADKK 608



 Score = 25.0 bits (52), Expect(2) = 4e-09
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +3

Query: 387 SIQEALVAADKEQRVRQEVAIKATSKGSDTRHVIKGSFSMPSQYHYTMETQSCTV 551
           +I+   +  D +   + E  +K + + S    V++G   +  Q HY +ETQS  V
Sbjct: 610 AIEAKSLLGDVQHFGKDENLVKESLENSSK--VLEGECDIGGQEHYYLETQSSLV 662


>U40947-5|AAC48070.1|  505|Caenorhabditis elegans Inward rectifying
           k (potassium)channel family protein 1 protein.
          Length = 505

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = -3

Query: 172 PTTPWSFNASDSSKPSISPRHTSDNTKATWTVLGPVYTSHAYFTSPEHCAS 20
           P+TP +   S S+ P  S  H+  NT+A     G +         P  CAS
Sbjct: 434 PSTPLNHFQSSSNSPVFSNNHSKFNTEAVTCEAGMLCPPTIVVQCPSTCAS 484


>AF039713-6|AAB96723.1|  829|Caenorhabditis elegans Hypothetical
           protein F57B10.6 protein.
          Length = 829

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 4/105 (3%)
 Frame = +3

Query: 213 TPSDVPWQ--DFAEEILASKKISYYGQPVALIAATTHRLVLT--AANLVRVKYKKSNAVP 380
           TP DV  +  D  EE L  KK   Y     ++ A   + +        V  K ++     
Sbjct: 332 TPDDVREEIVDRLEERLIDKKERGYQSKSGMLEAIARKRIRQHYGTETVEDKKEEEKRKK 391

Query: 381 VLSIQEALVAADKEQRVRQEVAIKATSKGSDTRHVIKGSFSMPSQ 515
              I++ ++    ++ V QEV ++  +K  D R        +PS+
Sbjct: 392 EQRIEDDMIEVSDDEMVLQEVLLETAAKSLDKRMASLEKHKVPSE 436


>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical
           protein F55H12.3 protein.
          Length = 2972

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
 Frame = +3

Query: 366 SNAVPVLSIQEALVAADKEQR-----VRQEVAIKATSKGSDTRHVIKGSFSMPSQYHYTM 530
           ++++ +LS    L A+D + R     +  + A  +    SD+  +I  S S+P   HYT 
Sbjct: 374 TSSIMILSSSFVLTASDTDTRKTEFQIYYQEADASLCNISDSNQLIFNSESIPIPCHYTF 433

Query: 531 ETQ 539
           +TQ
Sbjct: 434 KTQ 436


>Z74029-1|CAA98431.1|  293|Caenorhabditis elegans Hypothetical
           protein C45B11.3 protein.
          Length = 293

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 138 ESEALKLQGVVGFYTAKDIPGKNVFTPSDVPWQDFAEEILASK 266
           + E L+ QG+  F   + +PG ++     VP + FA    +SK
Sbjct: 250 DEELLQTQGITNFEQYECVPGSSLIPDFFVPEKSFAPRFGSSK 292


>EF472000-1|ABQ96385.1| 1142|Caenorhabditis elegans SMG-3 protein.
          Length = 1142

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 348 RVKYKKSNAVPVLSIQEALVAADKEQRVRQEVAIKATS 461
           RVKY++++ + ++ I+E L+  +KE R       K TS
Sbjct: 16  RVKYQETSRLQMVEIRETLLDNEKELRSLDSTLKKTTS 53


>AC084197-22|AAK68590.2| 1142|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 3 protein.
          Length = 1142

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 348 RVKYKKSNAVPVLSIQEALVAADKEQRVRQEVAIKATS 461
           RVKY++++ + ++ I+E L+  +KE R       K TS
Sbjct: 16  RVKYQETSRLQMVEIRETLLDNEKELRSLDSTLKKTTS 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,503,077
Number of Sequences: 27780
Number of extensions: 243816
Number of successful extensions: 712
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)