Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0779
         (564 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   3.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   3.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   3.7  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   3.7  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   6.5  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    21   6.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   8.6  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 478 RVSEPLLVALIATSCRTLCSLSAATNAS 395
           R + P  VAL  T+  T+ +L ++TNA+
Sbjct: 246 RNATPARVALGVTTVLTMTTLMSSTNAA 273


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 478 RVSEPLLVALIATSCRTLCSLSAATNAS 395
           R + P  VAL  T+  T+ +L ++TNA+
Sbjct: 246 RNATPARVALGVTTVLTMTTLMSSTNAA 273


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +2

Query: 329 HCC*FSSCEVQEI*CGSCVVYS 394
           HCC F +C+ +      C  Y+
Sbjct: 748 HCCDFDACDCEMTCPAGCKCYN 769


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 478 RVSEPLLVALIATSCRTLCSLSAATNAS 395
           R + P  VAL  T+  T+ +L ++TNA+
Sbjct: 185 RNATPARVALGVTTVLTMTTLMSSTNAA 212


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +3

Query: 6   CRNRHEAQCSGEVKYACDVYTGPRT 80
           C   H A    E+K  CD  TG  T
Sbjct: 363 CHTAHIACKFAEIKEKCDRRTGKTT 387


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +3

Query: 6   CRNRHEAQCSGEVKYACDVYTGPRT 80
           C   H A    E+K  CD  TG  T
Sbjct: 74  CHTAHIACKFAEIKEKCDRRTGKTT 98


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +3

Query: 174 FYTAKDIPGKNVFTPSDVP 230
           +Y  + +PG  V  P D P
Sbjct: 414 YYIEEYLPGNGVIIPDDPP 432


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,548
Number of Sequences: 438
Number of extensions: 2936
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)