Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0778
         (599 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q24GM4 Cluster: Putative uncharacterized protein; n=2; ...    34   2.2  
UniRef50_A0CUM3 Cluster: Chromosome undetermined scaffold_28, wh...    33   3.9  
UniRef50_Q1QYD3 Cluster: Exodeoxyribonuclease V, beta subunit; n...    32   9.0  

>UniRef50_Q24GM4 Cluster: Putative uncharacterized protein; n=2;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 2404

 Score = 34.3 bits (75), Expect = 2.2
 Identities = 13/57 (22%), Positives = 36/57 (63%), Gaps = 4/57 (7%)
 Frame = -1

Query: 350  INTMFFFNSNHV*VIILVQDFLYSHHFMYYIYK----VVIVSYLYVLQLITNLEFDL 192
            IN +  +++N   + +L+  F+YS+ + Y++      ++++++L++L ++ N+  DL
Sbjct: 1364 INQLDHYSTNVCAISVLLGLFIYSNDYNYFVIMSLILIILINFLFILMMVRNIILDL 1420


>UniRef50_A0CUM3 Cluster: Chromosome undetermined scaffold_28, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_28,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 243

 Score = 33.5 bits (73), Expect = 3.9
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
 Frame = -1

Query: 293 DFLYSHHFMYYIYKVVIVSYLYVLQLITNLEFDL*FRVIVKVEFVAIFVAM*VNLVFNIY 114
           +FLY +  +  ++ +++    ++L+ +   +F+L  R+I  + F   F    +NL  N  
Sbjct: 115 NFLYYYSLIILLFGILLSMCFHILKQLQQEKFNLPIRIIQNLVFDICFFIYLLNLFLNQI 174

Query: 113 SM*SDI-YFHNKIQG 72
            M S + YF+  +QG
Sbjct: 175 IMNSPLFYFYTFLQG 189


>UniRef50_Q1QYD3 Cluster: Exodeoxyribonuclease V, beta subunit; n=1;
           Chromohalobacter salexigens DSM 3043|Rep:
           Exodeoxyribonuclease V, beta subunit - Chromohalobacter
           salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB13768)
          Length = 1269

 Score = 32.3 bits (70), Expect = 9.0
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +1

Query: 136 TYIATKMATNSTFTMTRNYKSNSKLVMSCN 225
           TY+A +  T S FT+TRN++S+  +V + N
Sbjct: 472 TYLAARRETPSRFTLTRNFRSSVAMVEAVN 501


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 453,546,045
Number of Sequences: 1657284
Number of extensions: 7821538
Number of successful extensions: 16468
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16425
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 42317807226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)