Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0777
         (571 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1064 + 23700662-23700787,23701709-23701870,23701983-237021...    71   7e-13
07_03_1492 + 26960876-26960986,26961910-26962074,26962153-269622...    59   3e-09
03_01_0512 - 3849275-3849333,3849429-3849531,3849610-3849654,384...    54   6e-08
03_03_0021 + 13808274-13808384,13809036-13809200,13809249-138092...    44   1e-04
12_02_0506 - 19794383-19794670,19795066-19795140,19795337-197987...    29   3.4  
04_03_0695 + 18790491-18790565,18791299-18791427,18792981-18794189     29   3.4  
02_04_0481 + 23284296-23284448,23284553-23284753,23284855-232879...    28   6.0  
08_02_1353 + 26335306-26335448,26336025-26336106,26336322-263364...    27   8.0  

>07_03_1064 +
           23700662-23700787,23701709-23701870,23701983-23702101,
           23703128-23703202,23704387-23704480,23704856-23704915,
           23705083-23705151,23705457-23705555,23706201-23706245,
           23706339-23706441,23706665-23706723
          Length = 336

 Score = 70.9 bits (166), Expect = 7e-13
 Identities = 40/133 (30%), Positives = 72/133 (54%), Gaps = 6/133 (4%)
 Frame = +3

Query: 189 LFGKSQKSPAELVRSLKDAVTALER------GDKKAEKAQEDVSKNLVLIKNMLYGTSDA 350
           LF    ++PA++VR  ++ +  L+       GD K E+   ++SKN+  +K++LYG  ++
Sbjct: 4   LFKSKPRTPADVVRQTRELLIFLDLHSGSRGGDAKREEKMAELSKNIRELKSILYGNGES 63

Query: 351 EPQTDIIVAQLAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLRRQIGTRSPTVEY 530
           EP T+  V QL QE +             +++ E +KD  QV  N+ R+Q+ ++    EY
Sbjct: 64  EPVTEACV-QLTQEFFRENTLRLLIICLPKLNLETRKDATQVVANLQRQQVSSKIVASEY 122

Query: 531 ICTKPEILFTLMS 569
           +    ++L TL+S
Sbjct: 123 LEANKDLLDTLIS 135


>07_03_1492 +
           26960876-26960986,26961910-26962074,26962153-26962271,
           26962559-26962633,26963063-26963156,26963239-26963298,
           26963474-26963539,26963622-26963720,26964027-26964035
          Length = 265

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 34/111 (30%), Positives = 62/111 (55%)
 Frame = +3

Query: 201 SQKSPAELVRSLKDAVTALERGDKKAEKAQEDVSKNLVLIKNMLYGTSDAEPQTDIIVAQ 380
           ++ SP ELVRS+K+++ AL+   +   KA EDV KN+  ++  L G  + EP  + ++ Q
Sbjct: 12  ARPSPQELVRSIKESLLALDT--RTGAKALEDVEKNVSTLRQTLSGDGEVEPNQEQVL-Q 68

Query: 381 LAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLRRQIGTRSPTVEYI 533
           +A E+               + +EG+KD+A  ++ +LR+++      V+YI
Sbjct: 69  IALEICKEDVLSLFVQNMPSLGWEGRKDLAHCWSILLRQKVDEAYCCVQYI 119


>03_01_0512 -
           3849275-3849333,3849429-3849531,3849610-3849654,
           3849876-3849974,3850078-3850146,3850251-3850310,
           3850540-3850633,3850875-3850949,3851101-3851219,
           3851433-3851600,3852743-3852928
          Length = 358

 Score = 54.4 bits (125), Expect = 6e-08
 Identities = 40/137 (29%), Positives = 67/137 (48%), Gaps = 10/137 (7%)
 Frame = +3

Query: 189 LFGKSQKSPAELVRSLKDAVTALER-----GDK---KAEKAQEDVSKNLVLIKNMLYGTS 344
           LF    + P E+VR  ++ +  L       GDK   K E    D++K++  +K++LYG  
Sbjct: 22  LFRSKARGPVEVVRHARELLAFLAENHDACGDKRDVKREHKMVDLAKSIGEMKSILYGNG 81

Query: 345 DAEPQTDIIVAQLAQEMYXXXXXXXXXXXXXR--IDFEGKKDVAQVFNNVLRRQIGTRSP 518
           +A+P  D   +QL +E +                +D E +KDV QV  N+LR+++  R  
Sbjct: 82  EADP-VDEACSQLTKEFFKENTNSLHLLVVCLPYMDLETQKDVTQVTANLLRQKVDYRMV 140

Query: 519 TVEYICTKPEILFTLMS 569
             +Y+    ++L  LMS
Sbjct: 141 ASDYLEENQDLLDVLMS 157


>03_03_0021 +
           13808274-13808384,13809036-13809200,13809249-13809278,
           13809279-13809397,13809696-13809770,13812071-13812146,
           13813224-13813289,13813364-13813462,13814072-13814174,
           13814338-13814411
          Length = 305

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 22/55 (40%), Positives = 34/55 (61%)
 Frame = +3

Query: 210 SPAELVRSLKDAVTALERGDKKAEKAQEDVSKNLVLIKNMLYGTSDAEPQTDIIV 374
           +P E+VRS+KD+  AL    K   +A E+V KNL  ++ ML G  +AEP  + ++
Sbjct: 15  TPEEVVRSIKDSFQALHT--KNGARALEEVEKNLSSLRQMLSGDGEAEPNQEQVL 67


>12_02_0506 -
           19794383-19794670,19795066-19795140,19795337-19798704,
           19799503-19799671,19799758-19799850
          Length = 1330

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 31  DIENYNNLSKTRLAVAFNLSNFASLTFSWKSKYN 132
           D+EN +N S+  LA   N ++   L+  W +++N
Sbjct: 824 DVENVSNCSEASLAELSNKNDMELLSLEWSNQHN 857


>04_03_0695 + 18790491-18790565,18791299-18791427,18792981-18794189
          Length = 470

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +3

Query: 195 GKSQKSPAELVRSLKDAVTALERGDKKAEKAQEDVSKNLVLIK 323
           G+ +K   EL+R + +    +E   K+ EKAQE++ K   +++
Sbjct: 224 GRVEKICTELIRGIGEDKAEVEALKKETEKAQEELQKEREMLQ 266


>02_04_0481 +
           23284296-23284448,23284553-23284753,23284855-23287971,
           23288510-23289353,23289468-23290120,23290573-23290676,
           23290898-23291000
          Length = 1724

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +3

Query: 174 LNTMPLFGKSQKSPAELVRSLKDAVTALERGDKKAEKAQEDVSKNLVLIKNML 332
           L  +  FG+  K+ AE ++S+K A+  +    KKA+   E V   L   K  L
Sbjct: 300 LQKVNTFGEENKNLAEELQSVKAALDVVNAEAKKAKAEFEQVEHKLSTTKEKL 352


>08_02_1353 +
           26335306-26335448,26336025-26336106,26336322-26336451,
           26336486-26336548,26336549-26336691,26336827-26336913,
           26337014-26337088
          Length = 240

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 183 MPLFGKSQKSPAELVRSLKDAVTALERGD 269
           MP+     KSP+ L+   +DAVT L + D
Sbjct: 169 MPVLDNQLKSPSPLLLPARDAVTPLSQSD 197


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,934,879
Number of Sequences: 37544
Number of extensions: 254476
Number of successful extensions: 657
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)