Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0777
         (571 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54350| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)             30   1.5  
SB_5| Best HMM Match : No HMM Matches (HMM E-Value=.)                  28   4.7  
SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)                  28   4.7  
SB_46152| Best HMM Match : DUF241 (HMM E-Value=0.62)                   28   6.2  
SB_14351| Best HMM Match : zf-B_box (HMM E-Value=2.3e-12)              28   6.2  
SB_16251| Best HMM Match : F5_F8_type_C (HMM E-Value=0.0018)           27   8.2  
SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_54350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 924

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +3

Query: 168 SRLNTMPLFGKSQKSPAELVRSLKDAVTALERGDKKAEK--AQEDVSKNLVLIKNMLYGT 341
           +RLN    F  + K PAE++R  ++     E+  +KA K   +++  +  +++  ++Y  
Sbjct: 50  NRLNNFKKFKDNYKDPAEILRKKREERERQEKERRKALKIEREKEQERQGIILPEIIYSD 109

Query: 342 SDAE 353
            D E
Sbjct: 110 YDEE 113


>SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)
          Length = 2822

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +3

Query: 189  LFGKSQKSPAELVRSLKDAVTALERGDKKAEKAQEDVSKNLV-LIKNML 332
            LFGK  ++       LK+     ERGD++ E ++ED    L+  +KN+L
Sbjct: 2728 LFGKGLQTHQNEKTGLKEEFETAERGDEEFETSEEDDHYTLMEKVKNIL 2776


>SB_5| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 368 DICLWFCIRCTIKHIFNQYQILAHVFLSFFSFLITPL*SRHGIF 237
           D+ +   I  +I +I+ QY+++AHV+ S   F      SR G +
Sbjct: 89  DVRIASVICLSIANIYRQYEVVAHVYQSAIEFKCISSGSRAGSY 132


>SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)
          Length = 1058

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 201  SQKSPAELVRSLKDAVTALERGDKKAEKAQEDVSKNLVLIKNMLYGTSDA 350
            SQ+   E  +   + + A    DKK + A E VSKN+V  K      S++
Sbjct: 954  SQEKVGEAAQPESNKIEATASSDKKKDLAAEKVSKNVVTRKRPASSESES 1003


>SB_46152| Best HMM Match : DUF241 (HMM E-Value=0.62)
          Length = 1110

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +1

Query: 448 LKEKKMWPKFSTMSLDVKLEHDLQQ*STFVPSLKYYL 558
           L E+   PK     L +  E+DLQQ  T VP L  YL
Sbjct: 460 LTEEDKPPKEFDQRLPIITENDLQQLQTSVPELSEYL 496


>SB_14351| Best HMM Match : zf-B_box (HMM E-Value=2.3e-12)
          Length = 549

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 118 STRMLGKRNLTN*KRLPTWFWINYCNFQYHDPRADSC 8
           S R+ G + L +   LP   W  YCN  + DPR   C
Sbjct: 3   SHRIQGDKKLED---LPEEIWCRYCNGIFEDPRLLPC 36


>SB_16251| Best HMM Match : F5_F8_type_C (HMM E-Value=0.0018)
          Length = 213

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 66  VGSRF*FVKFRFPNILVEIEVQSYVDIITYITCPSRLNTMPLFGKS 203
           V   + FV+FR  N +  + +QSY     ++T  S L     FG S
Sbjct: 6   VAGNYEFVRFRSENCMDALGLQSYAIHDNHLTTSSSLEPNTTFGPS 51


>SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6500

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +3

Query: 252 ALERGDK--KAEKAQEDVSKNLVLIKNMLYGTSDAE 353
           ALE G +  +   A+E+  K LVLI +M  G SDAE
Sbjct: 455 ALEAGSEVLQGPGARENAHKVLVLITDMTSGLSDAE 490


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,701,421
Number of Sequences: 59808
Number of extensions: 315273
Number of successful extensions: 701
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)