Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0777
         (571 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53337-4|AAA96186.2|  636|Caenorhabditis elegans Hypothetical pr...   127   6e-30
Z99277-3|CAB16486.1|  338|Caenorhabditis elegans Hypothetical pr...   126   1e-29
U53337-5|AAP40522.1|  377|Caenorhabditis elegans Hypothetical pr...   126   1e-29
AF386744-1|AAL57289.1|  384|Caenorhabditis elegans PAF-1 protein.      29   1.8  
AF039716-8|AAB96738.1|  384|Caenorhabditis elegans Paf-acetylhyd...    29   1.8  
AF098995-9|AAC67486.1|  295|Caenorhabditis elegans F-box b prote...    29   2.4  
U28944-12|AAA68371.2|  363|Caenorhabditis elegans Hypothetical p...    27   9.5  

>U53337-4|AAA96186.2|  636|Caenorhabditis elegans Hypothetical
           protein R02E12.2a protein.
          Length = 636

 Score =  127 bits (306), Expect = 6e-30
 Identities = 69/148 (46%), Positives = 96/148 (64%), Gaps = 16/148 (10%)
 Frame = +3

Query: 171 RLNTMPL-FGKSQKSPAELVRSLKDAVTALER-------------GDKKAEKAQEDVSKN 308
           R   MPL FGKS KSPA++V++L++ +T L++              DKK +KA ++VSKN
Sbjct: 256 RRKVMPLLFGKSHKSPADVVKTLREVLTILDKLPPPKLDKDGNIQSDKKYDKALDEVSKN 315

Query: 309 LVLIKNMLYGTSDAEPQTDIIV--AQLAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFN 482
           + +IK+ +YG   AEP ++ +V  AQLAQE+Y             + +FE KKDV Q+FN
Sbjct: 316 VAMIKSFIYGNDSAEPSSEHVVQVAQLAQEVYNANILPMLIKMLPKFEFECKKDVGQIFN 375

Query: 483 NVLRRQIGTRSPTVEYICTKPEILFTLM 566
           N+LRRQIGTRSPTVEY+  +PEIL  L+
Sbjct: 376 NLLRRQIGTRSPTVEYLGARPEILIQLV 403


>Z99277-3|CAB16486.1|  338|Caenorhabditis elegans Hypothetical
           protein Y53C12A.4 protein.
          Length = 338

 Score =  126 bits (304), Expect = 1e-29
 Identities = 64/132 (48%), Positives = 88/132 (66%), Gaps = 5/132 (3%)
 Frame = +3

Query: 186 PLFGKSQKSPAELVRSLKDAVTALER-----GDKKAEKAQEDVSKNLVLIKNMLYGTSDA 350
           PLFGK+ K+PA++V++L+DA+  ++R      ++K EKA E+ +K L L K  +YG+   
Sbjct: 4   PLFGKADKTPADVVKNLRDALLVIDRHGTNTSERKVEKAIEETAKMLALAKTFIYGSDAN 63

Query: 351 EPQTDIIVAQLAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLRRQIGTRSPTVEY 530
           EP  +  V QLAQE+Y             + +FE KKDVA VFNN+LRRQIGTRSPTVEY
Sbjct: 64  EPNNEQ-VTQLAQEVYNANVLPMLIKHLHKFEFECKKDVASVFNNLLRRQIGTRSPTVEY 122

Query: 531 ICTKPEILFTLM 566
           +  +PEIL TL+
Sbjct: 123 LAARPEILITLL 134


>U53337-5|AAP40522.1|  377|Caenorhabditis elegans Hypothetical
           protein R02E12.2b protein.
          Length = 377

 Score =  126 bits (303), Expect = 1e-29
 Identities = 68/144 (47%), Positives = 95/144 (65%), Gaps = 16/144 (11%)
 Frame = +3

Query: 183 MPL-FGKSQKSPAELVRSLKDAVTALER-------------GDKKAEKAQEDVSKNLVLI 320
           MPL FGKS KSPA++V++L++ +T L++              DKK +KA ++VSKN+ +I
Sbjct: 1   MPLLFGKSHKSPADVVKTLREVLTILDKLPPPKLDKDGNIQSDKKYDKALDEVSKNVAMI 60

Query: 321 KNMLYGTSDAEPQTDIIV--AQLAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLR 494
           K+ +YG   AEP ++ +V  AQLAQE+Y             + +FE KKDV Q+FNN+LR
Sbjct: 61  KSFIYGNDSAEPSSEHVVQVAQLAQEVYNANILPMLIKMLPKFEFECKKDVGQIFNNLLR 120

Query: 495 RQIGTRSPTVEYICTKPEILFTLM 566
           RQIGTRSPTVEY+  +PEIL  L+
Sbjct: 121 RQIGTRSPTVEYLGARPEILIQLV 144


>AF386744-1|AAL57289.1|  384|Caenorhabditis elegans PAF-1 protein.
          Length = 384

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 462 DVAQVFNNVLRRQIGTRSPTVEYICTKPEILFTL 563
           D   VF N L +Q G   PT  Y+C +  I  TL
Sbjct: 317 DFPFVFPNWLAKQFGVHGPTEPYLCMQSAIELTL 350


>AF039716-8|AAB96738.1|  384|Caenorhabditis elegans
           Paf-acetylhydrolase protein 1 protein.
          Length = 384

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 462 DVAQVFNNVLRRQIGTRSPTVEYICTKPEILFTL 563
           D   VF N L +Q G   PT  Y+C +  I  TL
Sbjct: 317 DFPFVFPNWLAKQFGVHGPTEPYLCMQSAIELTL 350


>AF098995-9|AAC67486.1|  295|Caenorhabditis elegans F-box b protein
           protein 19 protein.
          Length = 295

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = -3

Query: 230 SNKLRRAFLRLTKERHSIKATWAGDISNYVYIRLYFDFHENVREAKFDKLKATANL 63
           SNK RR  +++ KE++ I     G   +  ++ L FD+  N +  K D  +   +L
Sbjct: 35  SNKTRR-LIKMLKEKNHITCISMGSPISIDFLSLTFDYKSNQKIVKIDNPEQNGSL 89


>U28944-12|AAA68371.2|  363|Caenorhabditis elegans Hypothetical
           protein C18A3.2 protein.
          Length = 363

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -1

Query: 427 CIKSSNKLVLYISCANCATMISVC 356
           C+ +S   + ++ CA+C   I+ C
Sbjct: 33  CVNASKTSISFLGCASCGVFIATC 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,497,446
Number of Sequences: 27780
Number of extensions: 243919
Number of successful extensions: 690
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)