Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0775
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    27   2.6  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    26   4.5  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    26   4.5  
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    25   6.0  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     25   6.0  

>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 49  PGSLMTHPEITRRLC*PLSINKVPSGDDNKPPI 147
           P  +M HP++ +      S+N +P  ++NK P+
Sbjct: 765 PAKVMAHPKVVQFYKQLASVNGLPIRNENKAPV 797


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 122 LGTLFIDKGQQSLLVISGCVISDPG 48
           LGTL  DK     +++SG V+++ G
Sbjct: 571 LGTLLFDKAPYKNVIVSGLVMAEDG 595


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 97  PLSINKVPSGDDNKPPISNTLSLIS 171
           P S+ + P    N PP+SNTL  +S
Sbjct: 706 PRSMMRDPQNLSNVPPVSNTLDQLS 730


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 135 VVIPTRDLIYRQGSTKPSCNLRMCHQRSRSP 43
           ++I  R L+YR    K   ++R+C QR   P
Sbjct: 350 IIIDDRSLLYRLTDKKFKISVRVCSQRYPYP 380


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 303 HRLDLMYILFMEICIFCFL 359
           H   L+ ILF+ +CI C L
Sbjct: 546 HGFSLLKILFISLCILCLL 564


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,320,273
Number of Sequences: 5004
Number of extensions: 45414
Number of successful extensions: 103
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)