Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0775
         (577 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0009 - 17101633-17101836,17101948-17102040,17102122-171023...    31   0.66 
09_04_0008 + 13651997-13652072,13652440-13652541,13653138-136531...    30   1.1  
06_01_0830 + 6261629-6261704,6261829-6261974,6262086-6262310,626...    29   2.0  
11_06_0577 - 25158833-25162864                                         29   3.5  
06_03_0968 - 26402154-26403834,26404322-26404383,26404473-264046...    29   3.5  
11_01_0762 + 6400052-6401845,6401977-6402609                           28   6.1  
01_05_0559 + 23281408-23282457,23282580-23282942,23283938-232839...    28   6.1  

>01_05_0009 -
           17101633-17101836,17101948-17102040,17102122-17102334,
           17102514-17102651,17102764-17102909,17106264-17106339
          Length = 289

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +3

Query: 9   RGAFLEKYGKSLETWIADDTSGDYKKALLTLV 104
           + AF ++   +LE  I +DTSGDYK  L+ L+
Sbjct: 254 KDAFQKRASVALEKAIGNDTSGDYKSFLMALL 285


>09_04_0008 +
           13651997-13652072,13652440-13652541,13653138-13653142,
           13653970-13654188,13654686-13654901,13654989-13655078,
           13656307-13656507
          Length = 302

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +3

Query: 3   SARGAFLEKYGKSLETWIADDTSGDYKKALLTLV 104
           S   A+   Y +SLE  +  +TSG+++ ALLT++
Sbjct: 191 SVASAYHHMYDRSLEKVVKSETSGNFELALLTIL 224



 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +3

Query: 9   RGAFLEKYGKSLETWIADDTSGDYKKALLTLV 104
           +  + +KY KSL   I  +TSG+Y+  LL+LV
Sbjct: 268 KAEYYKKYKKSLAEAIHSETSGNYRTFLLSLV 299


>06_01_0830 +
           6261629-6261704,6261829-6261974,6262086-6262310,
           6262910-6263122,6264007-6264300
          Length = 317

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +3

Query: 3   SARGAFLEKYGKSLETWIADDTSGDYKKALLTLV 104
           + R A+ E++ +SLE  +A   +GD++K L+ L+
Sbjct: 122 AVRQAYHERFKRSLEEDVAAHATGDFRKLLVPLI 155



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 15  AFLEKYGKSLETWIADDTSGDYKKALLTLV 104
           A+ ++    LE  +A DTSGDY++ LL L+
Sbjct: 284 AYQKRNSVPLERAVAGDTSGDYERMLLALL 313



 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +3

Query: 9   RGAFLEKYGKSLETWIADDTSGDYKKALL 95
           R A+ + YG+ L   I D+ SGD+++A++
Sbjct: 50  RRAYADTYGEELLRSITDEISGDFERAVI 78


>11_06_0577 - 25158833-25162864
          Length = 1343

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 444  RRLVATCTGAPEAVRATVQRKLCDLDEYK 358
            R+LVA   GAP   R T+   L DL+E K
Sbjct: 1205 RKLVACLAGAPHLSRLTLDGTLLDLNELK 1233


>06_03_0968 - 26402154-26403834,26404322-26404383,26404473-26404682,
            26404776-26404860,26405461-26405618,26405745-26405868,
            26405955-26406123,26406202-26406287,26406379-26406467,
            26406564-26406735,26407820-26408193
          Length = 1069

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 556  GGNTVLTPSGLVTHCREEVAEGTSDFVLKTIRTT 455
            GG   L+PS    HCRE  A  TS   +  ++T+
Sbjct: 902  GGTPFLSPSFRTNHCRESAAMDTSASSVHDLKTS 935


>11_01_0762 + 6400052-6401845,6401977-6402609
          Length = 808

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 526 LVTHCREEVAEGTSDFVLKTIRTTCKTKASS 434
           L THC+E V +     VL  I+ T +TKAS+
Sbjct: 583 LCTHCKEHVDQTFLQKVLDEIQKTHETKASA 613


>01_05_0559 +
           23281408-23282457,23282580-23282942,23283938-23283991,
           23284088-23284156
          Length = 511

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +1

Query: 118 PSGDDNKPPISNTLSLISLFC*AFKISTRNVTLEVTTVPTSKIGTTT 258
           P   + +PP+++  + I+    A  +S+  VTL  TT  +S I TTT
Sbjct: 349 PPVQEVRPPVASATATIA----AAAVSSTAVTLSSTTFTSSSISTTT 391


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,556,914
Number of Sequences: 37544
Number of extensions: 302486
Number of successful extensions: 782
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)