Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0775
         (577 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7681| Best HMM Match : Annexin (HMM E-Value=0)                      35   0.041
SB_26806| Best HMM Match : Annexin (HMM E-Value=0)                     31   0.89 
SB_37033| Best HMM Match : Annexin (HMM E-Value=0)                     30   1.6  
SB_33346| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_53221| Best HMM Match : zf-CCHC (HMM E-Value=0.061)                 29   2.7  
SB_11736| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_2939| Best HMM Match : Ku (HMM E-Value=2.8e-07)                     27   8.3  

>SB_7681| Best HMM Match : Annexin (HMM E-Value=0)
          Length = 426

 Score = 35.1 bits (77), Expect = 0.041
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +3

Query: 9   RGAFLEKYGKSLETWIADDTSGDYKKALLTL 101
           + +FL+KY K++   I  D SGDYKK L+ L
Sbjct: 123 KASFLQKYHKTVYKMIEGDCSGDYKKLLMAL 153


>SB_26806| Best HMM Match : Annexin (HMM E-Value=0)
          Length = 829

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +3

Query: 3   SARGAFLEKYGKSLETWIADDTSGDYKKALLTLV 104
           S +  + +KYG SLE  + ++TSGD++  L+ L+
Sbjct: 90  SIKEEYQKKYGCSLEDDVKEETSGDFEDLLVALM 123



 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 24  EKYGKSLETWIADDTSGDYKKALLTLV 104
           +KYG+SL   +  +TSGD++  L TL+
Sbjct: 556 KKYGRSLTDDMKSETSGDFENLLETLL 582


>SB_37033| Best HMM Match : Annexin (HMM E-Value=0)
          Length = 287

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 9   RGAFLEKYGKSLETWIADDTSGDYKKALLTL 101
           R A+   + + LE  IA DTSG +KK L++L
Sbjct: 195 RNAYNTLFSRDLEKDIAGDTSGKFKKFLISL 225


>SB_33346| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1074

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +1

Query: 118 PSGDDNKPPISNTLSLISLFC*AFKISTRNV--TLEVTTVPTSKIG 249
           PSG   +  + + LS  SL   AF+I T+NV  TL+  T   S  G
Sbjct: 213 PSGTQQEVRVDSKLSAFSLLLQAFQIDTQNVLKTLQKQTPTASSAG 258


>SB_53221| Best HMM Match : zf-CCHC (HMM E-Value=0.061)
          Length = 410

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -2

Query: 126 PTRDLIYRQGSTKPSCNLRMCHQRSRSPGTCRTSRGMPLV 7
           P R    +Q   KPS   R  HQR R   T + +RG   V
Sbjct: 13  PVRKARAKQSLPKPSARRRKTHQRYRKTTTLKMTRGAQTV 52


>SB_11736| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 503

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +3

Query: 246 RNYNENKYLFLKDSVPSACHRLDLMYILF--MEICIFCFLYTH 368
           R+ N N    LKDS PS  H  +++  L    EI ++C  + H
Sbjct: 312 RDLNRNYKTMLKDSFPSIWHVRNMIKRLLEEREITVYCDFHGH 354


>SB_2939| Best HMM Match : Ku (HMM E-Value=2.8e-07)
          Length = 512

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 266 ISLFKRQRSLGVSPVRSDVHFIHGDL 343
           +S +  QRSLG  PVR+D+   HG L
Sbjct: 370 VSHYIYQRSLGDGPVRTDLPPTHGSL 395


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,988,276
Number of Sequences: 59808
Number of extensions: 367146
Number of successful extensions: 799
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)