Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0773
(460 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy... 76 3e-15
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc... 25 5.6
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 25 7.3
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 25 7.3
SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces pomb... 25 7.3
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-... 24 9.7
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 24 9.7
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac... 24 9.7
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch... 24 9.7
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom... 24 9.7
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 24 9.7
>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 87
Score = 75.8 bits (178), Expect = 3e-15
Identities = 37/64 (57%), Positives = 46/64 (71%)
Frame = +3
Query: 63 LQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWH 242
+ F+QAAA+VK LK P +LL LYA FKQATVGD + +PGLLDLKGK K++AW
Sbjct: 1 MSSTFEQAAADVKELKETPNSDELLKLYALFKQATVGD-NNTEKPGLLDLKGKFKWNAWE 59
Query: 243 KLAG 254
+L G
Sbjct: 60 ELKG 63
>SPBC19G7.06 |mbx1||MADS-box transcription factor
Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 25.0 bits (52), Expect = 5.6
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Frame = -1
Query: 268 PPSXVPAS-------LCQASNLALPFKSRRPGLLAGSASPTVAC 158
PPS P+S + A N AL F RR GL+ + +V C
Sbjct: 6 PPSTAPSSPRRSIQRISDAKNKALTFNRRRLGLIKKAHELSVLC 49
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 24.6 bits (51), Expect = 7.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 114 LPTDAQLLNLYAHFKQATV 170
LP + ++LY HFKQA V
Sbjct: 210 LPAEVTPIDLYNHFKQAGV 228
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 24.6 bits (51), Expect = 7.3
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = -3
Query: 446 WRQKSLMRDDDAKNRAYLYSTLDN-ENYHVLASLKIKSFIL 327
W QK D A+N YL S + HV+ S I S IL
Sbjct: 676 WVQKYFFEDLKARNTLYLISEMRTFLRDHVVPSFHIGSVIL 716
>SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 178
Score = 24.6 bits (51), Expect = 7.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 78 DQAAANVKNLKALPTDAQLLNLYAHFKQATVGDAD 182
DQ NV++ + P QL+ L+ +A V DAD
Sbjct: 40 DQFFRNVRDTISEPKFTQLMELWLEKSRAEVPDAD 74
>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
L-lysine forming] |Schizosaccharomyces pombe|chr
1|||Manual
Length = 368
Score = 24.2 bits (50), Expect = 9.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 196 GLLAGSASPTVACLKWAYKL 137
G AG A ++CL WA++L
Sbjct: 136 GYHAGFAGSAISCLVWAHQL 155
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 24.2 bits (50), Expect = 9.7
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 75 FDQAAANVKNLKALPTDAQLLNLYAHFKQ 161
F Q AA+++ + DA LLN+Y +F+Q
Sbjct: 3302 FSQHAASLRICHGI--DAMLLNIYHYFEQ 3328
>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
Rad4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 648
Score = 24.2 bits (50), Expect = 9.7
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = +3
Query: 99 KNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLK 215
+N PT + L Q +G + P N P LL +K
Sbjct: 501 QNNMVFPTSDRDTRLQNSLAQQPIGHSTPHNSPSLLSVK 539
>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 24.2 bits (50), Expect = 9.7
Identities = 17/67 (25%), Positives = 29/67 (43%)
Frame = +3
Query: 33 TSYPHLINMSLQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDL 212
T+ P+ N S E+ + KN+ P+ L KQ ++ P N G+ D+
Sbjct: 389 TNIPYSPN-SNHEEINSIPLRNKNIFVPPSQGHSPLLEKIKKQGSLPSTTPVNEGGISDI 447
Query: 213 KGKAKFD 233
K+ +D
Sbjct: 448 IPKSLYD 454
>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 24.2 bits (50), Expect = 9.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 133 SLTCMPISNRPQLEMPIQPI 192
+LT + +SNR E PIQP+
Sbjct: 19 ALTTLSLSNRNHEEDPIQPV 38
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 24.2 bits (50), Expect = 9.7
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -1
Query: 274 GHPPSXVPASLCQASNLALPFKSRRPGLLAGSASP 170
GHPP AS +S+ + P +P A ++P
Sbjct: 404 GHPPPWAAASTSVSSSTSSPAPWAKPASSAAPSNP 438
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,891,469
Number of Sequences: 5004
Number of extensions: 35401
Number of successful extensions: 72
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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