Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0773
(460 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0417 - 3692247-3692329,3692442-3692504,3693233-3693350,369... 56 1e-08
03_05_0107 - 20883353-20883627,20883739-20883801,20884608-208847... 56 2e-08
06_01_0108 - 860080-860162,860276-860338,860857-860974,861481-86... 52 2e-07
04_04_1623 - 34846056-34846223,34846547-34846644,34846738-348468... 42 3e-04
05_01_0354 + 2770515-2770655,2770767-2771380,2772152-2772341,277... 28 4.2
04_04_0872 + 28903099-28903644,28903739-28904544,28904620-28905004 27 5.5
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 27 7.3
07_03_0472 - 18519169-18519285,18519561-18519671,18520689-185208... 27 7.3
05_01_0120 - 828834-831143 27 7.3
02_01_0418 - 3059575-3061279,3061915-3061973,3064270-3064353,306... 27 7.3
01_05_0353 + 21278753-21278884,21279482-21279535,21279912-212799... 27 7.3
11_04_0129 - 13763651-13763911,13763978-13764327,13764448-137646... 27 9.6
02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184 27 9.6
01_01_0901 - 7094953-7095231,7095337-7095522,7095785-7096285 27 9.6
>08_01_0417 -
3692247-3692329,3692442-3692504,3693233-3693350,
3694084-3694095
Length = 91
Score = 56.0 bits (129), Expect = 1e-08
Identities = 29/66 (43%), Positives = 39/66 (59%)
Frame = +3
Query: 57 MSLQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDA 236
M LQE F+Q A K L ++ L LY +KQATVGD + A RPG+ + +AK+DA
Sbjct: 1 MGLQEDFEQYAEKAKTLPESTSNENKLILYGLYKQATVGDVNTA-RPGIFAQRDRAKWDA 59
Query: 237 WHKLAG 254
W + G
Sbjct: 60 WKAVEG 65
>03_05_0107 -
20883353-20883627,20883739-20883801,20884608-20884725,
20885012-20885023
Length = 155
Score = 55.6 bits (128), Expect = 2e-08
Identities = 28/66 (42%), Positives = 40/66 (60%)
Frame = +3
Query: 57 MSLQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDA 236
M LQE F++ A VK L ++ L LY +KQATVGD + +RPG+ + +AK+DA
Sbjct: 1 MGLQEDFEEYAEKVKTLPESTSNEDKLILYGLYKQATVGDVN-TSRPGIFAQRDRAKWDA 59
Query: 237 WHKLAG 254
W + G
Sbjct: 60 WKAVEG 65
>06_01_0108 -
860080-860162,860276-860338,860857-860974,861481-861492
Length = 91
Score = 52.4 bits (120), Expect = 2e-07
Identities = 27/66 (40%), Positives = 38/66 (57%)
Frame = +3
Query: 57 MSLQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDA 236
M LQE+F++ A K L ++ L LY +KQATVG RPG+ +LK + K+DA
Sbjct: 1 MGLQEEFEEFAEKAKTLPDTISNEDKLLLYGLYKQATVGPV-TTGRPGIFNLKDRYKWDA 59
Query: 237 WHKLAG 254
W + G
Sbjct: 60 WKAVEG 65
>04_04_1623 -
34846056-34846223,34846547-34846644,34846738-34846829,
34847096-34847202,34847385-34847490,34848108-34848547
Length = 336
Score = 41.5 bits (93), Expect = 3e-04
Identities = 24/54 (44%), Positives = 33/54 (61%)
Frame = +3
Query: 87 AANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKL 248
AA+ + ++P AQL LY +K AT G A +P L LK +AK++AWHKL
Sbjct: 102 AASAASGTSVPEQAQL-QLYGLYKIATEGPCT-APQPSALKLKARAKWNAWHKL 153
>05_01_0354 +
2770515-2770655,2770767-2771380,2772152-2772341,
2772570-2772634,2772719-2773214
Length = 501
Score = 27.9 bits (59), Expect = 4.2
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -1
Query: 268 PPSXVPAS-LCQASNLALPFKSRRPGLLAGSASPTVA 161
PP PA +C+AS L L + +R L A +ASP V+
Sbjct: 454 PPPRPPAQEVCEASVLCLAGEKQRRFLEASAASPAVS 490
>04_04_0872 + 28903099-28903644,28903739-28904544,28904620-28905004
Length = 578
Score = 27.5 bits (58), Expect = 5.5
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = -1
Query: 232 SNLALPFKSRRPGLLAGSASPTVACLKWAYKLRSWASVGRAFRFFTL 92
+N ALP K P A+P+ A L WA S+ +V R F F L
Sbjct: 389 TNEALP-KELHPVYSMFIATPSAASLAWAAIYGSFDAVARTFFFMAL 434
>09_02_0048 -
3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 27.1 bits (57), Expect = 7.3
Identities = 19/51 (37%), Positives = 21/51 (41%)
Frame = +3
Query: 132 LLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGTXEGGCPXKP 284
LL+L H A GD DP R L+G A LAG G P P
Sbjct: 8 LLDLLLHPPAAAAGDRDPPAR----RLRGPAARAGLEALAGALAAGPPADP 54
>07_03_0472 -
18519169-18519285,18519561-18519671,18520689-18520816,
18520965-18521147,18521337-18521427
Length = 209
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = -1
Query: 268 PPSXVPASLCQASNLALPFKSRRPGLLAGSASPTVACLKWAYKLRSWA 125
PP+ + P +RR L SASP+ W Y + SW+
Sbjct: 137 PPAEARPRYLDTCDGPAPTPTRRIPLSGASASPSQMDQSWMYGIDSWS 184
>05_01_0120 - 828834-831143
Length = 769
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 268 PPSXVPASLCQASNLALPFKSRRPGLLAGSASPT 167
PP P+SL S+++ + S P L ++SPT
Sbjct: 501 PPFLSPSSLSSDSSISSKYSSDSPSLSPSTSSPT 534
>02_01_0418 -
3059575-3061279,3061915-3061973,3064270-3064353,
3064395-3064559
Length = 670
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 15 RVYRRLTSYPHLINMSLQEKFDQAAANVKNLKAL 116
R YR +TS+P L+N+S + LKAL
Sbjct: 499 RQYRAVTSFPALLNLSANSFTSVIPPKIGELKAL 532
>01_05_0353 +
21278753-21278884,21279482-21279535,21279912-21279991,
21280099-21280361,21280837-21280958
Length = 216
Score = 27.1 bits (57), Expect = 7.3
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +2
Query: 143 VCPFQTGHSWRCR 181
V P TGH WRCR
Sbjct: 113 VAPHSTGHVWRCR 125
>11_04_0129 -
13763651-13763911,13763978-13764327,13764448-13764606,
13764677-13765160
Length = 417
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -3
Query: 137 KELGISWKSFQVLHVGCGLVKFFLERHIDQMWV 39
KEL + Q+ V G+V F ++RH W+
Sbjct: 373 KELAMVMMEKQLCDVSHGIVAFIMQRHWGSWWI 405
>02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184
Length = 544
Score = 26.6 bits (56), Expect = 9.6
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -1
Query: 268 PPSXVPASLCQASNLALPFKSRRPGLLAGSASP 170
P PASL +A++ A F RRP A S +P
Sbjct: 244 PMRAFPASLTEAASSAPAFPPRRPNSWAPSPAP 276
>01_01_0901 - 7094953-7095231,7095337-7095522,7095785-7096285
Length = 321
Score = 26.6 bits (56), Expect = 9.6
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -1
Query: 325 EADGSYETFDDLDVGFXGHPPSXVPASLCQASNLALPF 212
E +G+Y+ FDD D G G+ PS + S LAL F
Sbjct: 111 EEEGAYDEFDDDDDG--GYEPSRCCVLAFRFSLLALAF 146
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,707,745
Number of Sequences: 37544
Number of extensions: 248101
Number of successful extensions: 515
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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