Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0773
         (460 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3091| Best HMM Match : No HMM Matches (HMM E-Value=.)               51   4e-07
SB_14528| Best HMM Match : CXCXC (HMM E-Value=8.1)                     27   7.5  
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)                    27   9.9  
SB_24336| Best HMM Match : PqiA (HMM E-Value=1.5)                      27   9.9  

>SB_3091| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 51.2 bits (117), Expect = 4e-07
 Identities = 28/61 (45%), Positives = 38/61 (62%)
 Frame = +3

Query: 63  LQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWH 242
           +Q+ F QA   V++LK L  D Q L  Y  FKQAT G     +RPG  D+ GKAK+++WH
Sbjct: 13  VQDLFAQATDYVRSLKNL-RDEQKLLFYGLFKQATEGPCK-TSRPGFWDIVGKAKWESWH 70

Query: 243 K 245
           +
Sbjct: 71  Q 71


>SB_14528| Best HMM Match : CXCXC (HMM E-Value=8.1)
          Length = 310

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 12/65 (18%)
 Frame = -1

Query: 220 LPFK----SRRPGLLAGSASPT-VACLKWA-------YKLRSWASVGRAFRFFTLAAAWS 77
           LP+K     RR  LL     P  + C++W        Y L SW +   A RF+ ++   +
Sbjct: 69  LPYKLGSHERRQSLLPPRTPPVAITCMRWVATNAASRYYLMSWVATNAASRFYLISWVAT 128

Query: 76  NFSWR 62
           N + R
Sbjct: 129 NAASR 133


>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -1

Query: 274 GHPPSXVPASLCQASNLALPFKSRRPGLLAGSASPTV 164
           G PP   PA++   + L +P    + GL+ G    T+
Sbjct: 312 GPPPRGPPANMPGINTLEMPVPGNKCGLIIGKGGETI 348


>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 4833

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 57   MSLQEKFDQAAANVKNLKALPTDAQLLNLYAHFK-QATVGDAD 182
            + L +  D+   +  NL    TDA   NLY+  K + TVGD++
Sbjct: 1106 LHLSKTLDRETTSSYNLVVKATDASNANLYSTAKIEITVGDSN 1148


>SB_24336| Best HMM Match : PqiA (HMM E-Value=1.5)
          Length = 260

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 356 QEHDNFHYRVYYINTRDFSHHHR 424
           Q H    Y VY +++    HHH+
Sbjct: 70  QHHHQLQYSVYSVSSASLQHHHQ 92


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,917,504
Number of Sequences: 59808
Number of extensions: 263141
Number of successful extensions: 490
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)