Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0773
         (460 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   0.91 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   6.4  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   6.4  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 0.91
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -3

Query: 446 WRQKSLM-RDDDAKNRAYLYSTLDNENYH 363
           W QK L+ RD   KN   +Y  LDN + H
Sbjct: 255 WHQKELVRRDSRRKNYGGVYH-LDNHHVH 282


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -1

Query: 304 TFDDLDVGFXGHPPSXVPASLCQASNLALPFKSRRPGLLAGSASPTVA 161
           T  D+D    G P    P ++ QA  +AL   S   G + G+    VA
Sbjct: 18  TTQDVDGFLQGFPGKNSPYTVTQAILIALVLGSIIVGTVIGNILVCVA 65


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 419 DDAKNRAYLYSTLDNENYHVLAS 351
           DD ++  +LY+   +E Y VL S
Sbjct: 248 DDYESLVHLYTRDQSETYDVLRS 270


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,645
Number of Sequences: 438
Number of extensions: 2122
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)