Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0773
         (460 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31812.1 68414.m03905 acyl-CoA binding protein / ACBP identic...    59   2e-09
At3g13620.1 68416.m01714 amino acid permease family protein weak...    29   2.0  
At3g05420.2 68416.m00594 acyl-CoA binding family protein similar...    29   2.0  
At3g05420.1 68416.m00593 acyl-CoA binding family protein similar...    29   2.0  
At3g07520.1 68416.m00896 glutamate receptor family protein (GLR1...    27   8.1  
At3g05770.1 68416.m00648 expressed protein                             27   8.1  
At1g17615.1 68414.m02177 disease resistance protein (TIR-NBS cla...    27   8.1  

>At1g31812.1 68414.m03905 acyl-CoA binding protein / ACBP identical
           to acyl-CoA-binding protein (ACBP) [Arabidopsis
           thaliana] SWISS-PROT:P57752
          Length = 92

 Score = 58.8 bits (136), Expect = 2e-09
 Identities = 28/66 (42%), Positives = 41/66 (62%)
 Frame = +3

Query: 57  MSLQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDA 236
           M L+E+F++ A  V  L  LP++  LL LY  +KQA  G  D  +RPG+  +K +AK+DA
Sbjct: 1   MGLKEEFEEHAEKVNTLTELPSNEDLLILYGLYKQAKFGPVD-TSRPGMFSMKERAKWDA 59

Query: 237 WHKLAG 254
           W  + G
Sbjct: 60  WKAVEG 65


>At3g13620.1 68416.m01714 amino acid permease family protein weak
           similarity to SP|Q9WTR6 Cystine/glutamate transporter
           (Amino acid transport system xc-) {Mus musculus};
           contains Pfam profile PF00324: Amino acid permease
          Length = 478

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 148 AYKLRSWASVGRAFRFFTLAAAWSNFSWRDILI 50
           AY+L   A +G   +FF + + W N  W  ILI
Sbjct: 314 AYQLEGMAELGFLPKFFGVRSKWFNTPWVGILI 346


>At3g05420.2 68416.m00594 acyl-CoA binding family protein similar to
           PIR|S68824|S68824 rngB protein, cytosolic (Dictyostelium
           discoideum); contains Pfam profiles PF00887: Acyl CoA
           binding protein, PF01344: Kelch motif
          Length = 669

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 20/57 (35%), Positives = 30/57 (52%)
 Frame = +3

Query: 78  DQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKL 248
           D +A NV  +   P D  LL LYA ++QATVG  +   +P       ++K+ +W  L
Sbjct: 29  DSSAKNV--ISKFPDDTALL-LYALYQQATVGPCN-TPKPSAWRPVEQSKWKSWQGL 81


>At3g05420.1 68416.m00593 acyl-CoA binding family protein similar to
           PIR|S68824|S68824 rngB protein, cytosolic (Dictyostelium
           discoideum); contains Pfam profiles PF00887: Acyl CoA
           binding protein, PF01344: Kelch motif
          Length = 668

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 20/57 (35%), Positives = 30/57 (52%)
 Frame = +3

Query: 78  DQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKL 248
           D +A NV  +   P D  LL LYA ++QATVG  +   +P       ++K+ +W  L
Sbjct: 29  DSSAKNV--ISKFPDDTALL-LYALYQQATVGPCN-TPKPSAWRPVEQSKWKSWQGL 81


>At3g07520.1 68416.m00896 glutamate receptor family protein (GLR1.4)
           plant glutamate receptor family, PMID:11379626
          Length = 861

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = -1

Query: 247 SLCQASNLA-LPFKSRRPGLLAGSASPTVACLKWAYKLRSWASVGRAFRFFTLAAAWSNF 71
           SL +A NLA L  K++ P + +     +++  K+ Y +++        +   +AA +SNF
Sbjct: 119 SLLEAKNLAELGEKTKVPVISSFQVPSSLSLAKYNYFIQATHDTSSEAK--GIAALFSNF 176

Query: 70  SWRDILI 50
            WR  ++
Sbjct: 177 DWRTAVL 183


>At3g05770.1 68416.m00648 expressed protein
          Length = 410

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +3

Query: 270 CPXKPTSRSSKVS*LP-SASKNKRLNF 347
           CP + T  SSK S LP S  K K +NF
Sbjct: 50  CPHQQTENSSKTSTLPKSPEKLKAMNF 76


>At1g17615.1 68414.m02177 disease resistance protein (TIR-NBS
           class), putative domain signature TIR exists, suggestive
           of a disease resistance protein.
          Length = 380

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 20/68 (29%), Positives = 30/68 (44%)
 Frame = +3

Query: 3   ARGGRVYRRLTSYPHLINMSLQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDAD 182
           ARGG     L  Y   +   + +KF Q+   ++N+K +P D Q+ NL   F     G   
Sbjct: 220 ARGGNGRSALARY---VYQKIFKKF-QSHCFLENVKGIPHDCQMSNLRDEFLIRIQGGYS 275

Query: 183 PANRPGLL 206
                GL+
Sbjct: 276 RMKTSGLI 283


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,945,080
Number of Sequences: 28952
Number of extensions: 188439
Number of successful extensions: 472
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)