Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0771
         (631 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)               29   3.1  
SB_29982| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
          Length = 506

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 247 VSSEEDSVLKFLQTFDELSTIIKVTFGWGKLNGNV 351
           V+SE+D   KFL  FDEL  I         +NGN+
Sbjct: 331 VTSEQDRESKFLHEFDELPDIENAYTPLPSMNGNL 365


>SB_29982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 62

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 380 IPSTRNFVIYTFPLSLPHPNVTLIIVLSSSNVC 282
           +PST N ++Y+  +S    N T ++ L  S  C
Sbjct: 15  VPSTTNVILYSIMISCAEYNRTALVSLVYSGTC 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,813,230
Number of Sequences: 59808
Number of extensions: 275208
Number of successful extensions: 729
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)