Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0771
         (631 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g04030.2 68415.m00372 heat shock protein, putative strong sim...    28   5.9  
At2g04030.1 68415.m00371 heat shock protein, putative strong sim...    28   5.9  
At4g30200.3 68417.m04295 expressed protein contains weak similar...    27   7.8  
At4g30200.2 68417.m04294 expressed protein contains weak similar...    27   7.8  
At4g30200.1 68417.m04293 expressed protein contains weak similar...    27   7.8  

>At2g04030.2 68415.m00372 heat shock protein, putative strong
           similarity to heat shock protein [Arabidopsis thaliana]
           GI:1906830; contains Pfam profiles PF02518: ATPase,
           histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein, PF00183: Hsp90 protein
          Length = 777

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 559 AFTHTLTQGSIDNKSIFIIPSMG 491
           A TH  T+G ++ +SI  IP MG
Sbjct: 364 AHTHFTTEGEVEFRSILYIPGMG 386


>At2g04030.1 68415.m00371 heat shock protein, putative strong
           similarity to heat shock protein [Arabidopsis thaliana]
           GI:1906830; contains Pfam profiles PF02518: ATPase,
           histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein, PF00183: Hsp90 protein
          Length = 780

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 559 AFTHTLTQGSIDNKSIFIIPSMG 491
           A TH  T+G ++ +SI  IP MG
Sbjct: 364 AHTHFTTEGEVEFRSILYIPGMG 386


>At4g30200.3 68417.m04295 expressed protein contains weak
           similarities to Pfam profiles: PF00041 Fibronectin type
           III domain, PF00628 PHD-finger; supporting cDNA
           gi|11177136|dbj|AB050977.1|
          Length = 702

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 586 RRPDSECSSAFTHTLTQGSIDNKSIFIIPSMGA*TRN 476
           ++ DS+C     +T  Q  +DN S ++IP+    T N
Sbjct: 90  KKRDSDCLPIQRNTKRQRKVDNPSRYVIPATNIVTSN 126


>At4g30200.2 68417.m04294 expressed protein contains weak
           similarities to Pfam profiles: PF00041 Fibronectin type
           III domain, PF00628 PHD-finger; supporting cDNA
           gi|11177136|dbj|AB050977.1|
          Length = 714

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 586 RRPDSECSSAFTHTLTQGSIDNKSIFIIPSMGA*TRN 476
           ++ DS+C     +T  Q  +DN S ++IP+    T N
Sbjct: 90  KKRDSDCLPIQRNTKRQRKVDNPSRYVIPATNIVTSN 126


>At4g30200.1 68417.m04293 expressed protein contains weak
           similarities to Pfam profiles: PF00041 Fibronectin type
           III domain, PF00628 PHD-finger; supporting cDNA
           gi|11177136|dbj|AB050977.1|
          Length = 685

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 586 RRPDSECSSAFTHTLTQGSIDNKSIFIIPSMGA*TRN 476
           ++ DS+C     +T  Q  +DN S ++IP+    T N
Sbjct: 73  KKRDSDCLPIQRNTKRQRKVDNPSRYVIPATNIVTSN 109


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,008,363
Number of Sequences: 28952
Number of extensions: 194071
Number of successful extensions: 373
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)