Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0770
         (448 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual    64   9e-12
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    27   0.99 
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc...    27   1.7  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    27   1.7  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    26   3.0  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    25   5.3  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    25   5.3  
SPAC12B10.07 |acp1||F-actin capping protein alpha subunit|Schizo...    25   7.0  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   7.0  

>SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 64.1 bits (149), Expect = 9e-12
 Identities = 39/108 (36%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
 Frame = +1

Query: 118 VMANWPALGSIILPNVGGWANGLFFAGQIRKDNSEKSWYDELKKPSWTPPKWVFGPAWTV 297
           +  NW    + ++P   GW  G  +  + RKD      Y+  K+P + PP   FGPAWT+
Sbjct: 11  ISKNW--WSASLVPVACGWFIGNSY--KPRKD------YENKKQPKFHPPASAFGPAWTL 60

Query: 298 LYSSMGYASYLIWE-ECDGFTEDAVLPLTLYGVQLLLNWSWTPIFFGL 438
           LY +MGYAS+L ++ +    T  +     LY  QL  N++W P+F+GL
Sbjct: 61  LYLTMGYASHLAYKADPLMITNASRNGSILYIAQLAANFAWMPLFYGL 108


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 27.5 bits (58), Expect = 0.99
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 419 VQDQLSSSCTPYNVRGRTASSVKPSHSSQMR 327
           +Q  LSS  T  NVR + A+ V+PS S   R
Sbjct: 369 IQSTLSSRTTTGNVRTKAANIVRPSSSINRR 399


>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 9/40 (22%), Positives = 23/40 (57%)
 Frame = +1

Query: 322 SYLIWEECDGFTEDAVLPLTLYGVQLLLNWSWTPIFFGLK 441
           ++++ ++C+GF+  + L         L+++ W P+ +G K
Sbjct: 211 NFILGQDCNGFSLGSFLVRRSDWTSRLMDFLWDPVVYGQK 250


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = +2

Query: 248 SQAGLPQSGYLVQLGLFSTAAWDMPLTSSGRNVMVLLKMQSYLSHCTEYSCYSTGLGLLF 427
           +Q+GL  SG + + GLF         T    NV  LL +   LSH   YS     +   F
Sbjct: 478 NQSGL--SGSVFRYGLFENYVDSCVTTDEAFNVCDLLSISDCLSHDFPYSYTGDEISTWF 535

Query: 428 S 430
           S
Sbjct: 536 S 536


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 263 GVQLGFFNSSYQDFSLLSLRI*PAKNSPLAHPPTFGRII 147
           G  LG  N++Y+     SL I   + +P    PTFGR+I
Sbjct: 385 GELLGSQNTTYKPVYYHSLLIECCRIAPKILAPTFGRVI 423


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 195 RKEQSIGPSTDIWEDNRTECRPISHYEIF*NGLWVK 88
           R+E S     D+  D+  E + ++HYE F   +W K
Sbjct: 405 REESSTFMDIDVEFDDELEGQSLTHYESFMMFVWKK 440


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 357 SKTITFLPDEVRGISHAAVENSPSWTKYPLWGSPAWLL 244
           SK+   L + V  +S    E++P+  +  L G P W +
Sbjct: 595 SKSSNSLKESVEALSEIPFEDAPALDESDLSGDPFWAI 632


>SPAC12B10.07 |acp1||F-actin capping protein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +3

Query: 150 YPPKCRWMGQWTVLCGSN 203
           Y PK  W G W  +C  N
Sbjct: 145 YNPKNYWNGSWRCICNYN 162


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 205 RKDNSEKSWYDELKKPSWTPPKWVFGPAWTVLYSSMGYASYL 330
           R +N++     +L KPSW    W F      L     YAS+L
Sbjct: 694 RDENNKPKLITQLFKPSWKVNVWGFKSDKVKLNIRTLYASHL 735


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,088,541
Number of Sequences: 5004
Number of extensions: 45290
Number of successful extensions: 121
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)