Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0770
(448 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0320 - 2578911-2579144,2579243-2579455,2579580-2579858,257... 29 1.7
01_05_0721 + 24594815-24594834,24595207-24595313,24595417-245954... 28 3.0
02_05_1331 + 35736543-35736638,35737407-35737525,35737670-357377... 27 5.2
01_05_0331 - 21057957-21058205,21059213-21059791 27 6.9
01_01_0979 + 7743243-7744063,7744141-7744324,7745242-7745425,774... 27 6.9
11_06_0365 - 22742886-22744223 27 9.1
11_06_0362 - 22723104-22724441 27 9.1
06_01_0077 + 626126-626137,626222-627421 27 9.1
01_02_0118 + 11271020-11271293,11272849-11273145,11273226-112734... 27 9.1
>01_01_0320 -
2578911-2579144,2579243-2579455,2579580-2579858,
2579961-2580050,2580258-2580439,2581366-2582470
Length = 700
Score = 29.1 bits (62), Expect = 1.7
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 226 SWYDELKKPSWTPPK 270
SW +E+KKPSW P K
Sbjct: 600 SWQEEIKKPSWHPYK 614
>01_05_0721 +
24594815-24594834,24595207-24595313,24595417-24595472,
24595562-24595810,24595871-24596077,24596157-24596243,
24596331-24596426,24596500-24596715,24596908-24597090,
24597222-24597449
Length = 482
Score = 28.3 bits (60), Expect = 3.0
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = -2
Query: 414 RPVE*QLYSVQCER*DCIFSKTITFLPDEVRGISHAAVENS 292
R +E + SV ER +FS T+ P+EVR ISH A++ +
Sbjct: 188 RDIERIIASVPKERQTLLFSATV---PEEVRQISHIAMKKN 225
>02_05_1331 + 35736543-35736638,35737407-35737525,35737670-35737715,
35738117-35738172,35738452-35738547,35738844-35738961,
35739406-35739672,35740023-35740124,35740302-35740659,
35740750-35740863,35741045-35741676,35741895-35742103,
35742597-35742819,35743419-35743538,35743888-35743914,
35744281-35745045,35745431-35748511
Length = 2142
Score = 27.5 bits (58), Expect = 5.2
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 270 LWGSPAWLL*LIIPGLFTVVFTDLTRKEQSIGPSTDIWEDNR 145
++GSP L + I GL + LT+ S+G S+ I E N+
Sbjct: 1868 IFGSPETRLLMHITGLLPWLGLQLTKDASSLGSSSPIQEQNQ 1909
>01_05_0331 - 21057957-21058205,21059213-21059791
Length = 275
Score = 27.1 bits (57), Expect = 6.9
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 220 EKSWYDELKKPSWTPPKWVFGP 285
E W D + PS PP +FGP
Sbjct: 158 ESDWMDTVIDPSHVPPSILFGP 179
>01_01_0979 +
7743243-7744063,7744141-7744324,7745242-7745425,
7746640-7746746
Length = 431
Score = 27.1 bits (57), Expect = 6.9
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = -3
Query: 215 LSLRI*PAKNSPLAHPPTFGRIIEPSAG 132
+S RI PAK SP A +F I+PSAG
Sbjct: 54 VSRRITPAKVSPFAKWKSFVIAIDPSAG 81
>11_06_0365 - 22742886-22744223
Length = 445
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -2
Query: 315 SHAAVENSPSWTKYPLWGSPAWL 247
S A ENSP W W SP W+
Sbjct: 421 SFACTENSPPWLN---WPSPVWI 440
>11_06_0362 - 22723104-22724441
Length = 445
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -2
Query: 315 SHAAVENSPSWTKYPLWGSPAWL 247
S A ENSP W W SP W+
Sbjct: 421 SFACTENSPPWLN---WPSPVWI 440
>06_01_0077 + 626126-626137,626222-627421
Length = 403
Score = 26.6 bits (56), Expect = 9.1
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +3
Query: 21 RID-IHKFQQRLV*-LNFIITSLQFLPIIRFKRFRNG*LACTRFDYPPKCRWMGQWTVLC 194
R+D I +F +L+ + + + +LQ PI+R ++ + +D +C +M W V+C
Sbjct: 220 RVDQIVEFNGQLIAVIEYSLYTLQLAPILRLEKIKT-----LWWDNMNECPYMRPWFVVC 274
Query: 195 G 197
G
Sbjct: 275 G 275
>01_02_0118 +
11271020-11271293,11272849-11273145,11273226-11273439,
11273563-11273672,11273746-11273945,11274439-11274501,
11274560-11274663,11274868-11275055,11275129-11275328,
11275463-11275693
Length = 626
Score = 26.6 bits (56), Expect = 9.1
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +1
Query: 106 LKDFVMANWPALGSIILPNVGGWANGLFFAGQIRKDNSEKSWYDELKKPSWT-PPKWV 276
++ FV W + G I NGL A Q K + S + +L+ SW+ PP V
Sbjct: 109 VRSFVNPVWTSSGRPITQGDSLNGNGLNTASQTEKQSDSDSSHKKLQGLSWSFPPSIV 166
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,552,943
Number of Sequences: 37544
Number of extensions: 295899
Number of successful extensions: 734
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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