Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0770
         (448 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81048-2|CAB02840.1|  553|Caenorhabditis elegans Hypothetical pr...    50   6e-07
Z82051-2|CAB04816.1|  237|Caenorhabditis elegans Hypothetical pr...    27   4.7  

>Z81048-2|CAB02840.1|  553|Caenorhabditis elegans Hypothetical
           protein C41G7.3 protein.
          Length = 553

 Score = 50.4 bits (115), Expect = 6e-07
 Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
 Frame = +1

Query: 208 KDNSEKSWYDELKKPSWTPPK-WVFGPAWTVLYSSMGYASYLIWEECDGFT-EDAVLPLT 381
           KD     W+  LKKP+W P    V+     +  S +GYASYL+++   GF   D  L L 
Sbjct: 414 KDQQVADWWAALKKPNWAPKDVRVYSAVDLLTLSPLGYASYLVYKNGGGFDYNDTKLALG 473

Query: 382 LYGVQLLLNWSWTPI 426
           LYG  + L  +  PI
Sbjct: 474 LYGASVTLAVATIPI 488


>Z82051-2|CAB04816.1|  237|Caenorhabditis elegans Hypothetical
           protein T23D5.3 protein.
          Length = 237

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +2

Query: 152 SSQMSVDGPMDCSLRVKSVKTTVKSPGMMS*RSQAGLPQSGYLVQLGLFSTAA 310
           ++Q +  GP     RV+ V TT  +PG  + RS   +  +G     G  +T +
Sbjct: 80  TTQCTTCGPKTTPQRVEPVMTTTVAPGATTVRSPGSVTTAGSATTAGSATTGS 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,419,518
Number of Sequences: 27780
Number of extensions: 250119
Number of successful extensions: 583
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)