Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0770
         (448 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g47770.1 68415.m05963 benzodiazepine receptor-related contain...    40   8e-04
At1g13540.1 68414.m01587 expressed protein                             30   0.82 
At1g11340.1 68414.m01302 S-locus lectin protein kinase family pr...    30   0.82 
At2g23610.1 68415.m02817 esterase, putative similar to ethylene-...    29   1.1  
At5g41870.1 68418.m05098 glycoside hydrolase family 28 protein /...    28   2.5  
At1g18900.2 68414.m02353 pentatricopeptide (PPR) repeat-containi...    28   3.3  
At1g18900.1 68414.m02352 pentatricopeptide (PPR) repeat-containi...    28   3.3  
At3g30280.1 68416.m03824 transferase family protein similar to d...    27   4.4  
At4g23500.1 68417.m03387 glycoside hydrolase family 28 protein /...    27   5.8  
At2g27230.1 68415.m03272 transcription factor-related contains w...    27   5.8  
At5g54990.1 68418.m06848 zinc finger (C3HC4-type RING finger) fa...    27   7.6  

>At2g47770.1 68415.m05963 benzodiazepine receptor-related contains
           weak similarity to Peripheral-type benzodiazepine
           receptor (PBR) (PKBS) (Mitochondrial benzodiazepine
           receptor) (Swiss-Prot:P30536) [Homo sapiens]
          Length = 196

 Score = 39.9 bits (89), Expect = 8e-04
 Identities = 22/63 (34%), Positives = 27/63 (42%)
 Frame = +1

Query: 244 KKPSWTPPKWVFGPAWTVLYSSMGYASYLIWEECDGFTEDAVLPLTLYGVQLLLNWSWTP 423
           K  SW PP W+           MG A++L+W   DG        L LY  Q LL   W P
Sbjct: 79  KSSSWIPPLWLLHTTCLASSGLMGLAAWLVW--VDGGFHKKPNALYLYLAQFLLCLVWDP 136

Query: 424 IFF 432
           + F
Sbjct: 137 VTF 139


>At1g13540.1 68414.m01587 expressed protein 
          Length = 381

 Score = 29.9 bits (64), Expect = 0.82
 Identities = 17/76 (22%), Positives = 33/76 (43%)
 Frame = +1

Query: 205 RKDNSEKSWYDELKKPSWTPPKWVFGPAWTVLYSSMGYASYLIWEECDGFTEDAVLPLTL 384
           +K+ S + +Y     P   PP ++    WTV YS   +  + + ++  G   +    L L
Sbjct: 150 QKEPSSRCYYATSVAPDGVPPWFLRKKEWTVEYSR--FQDFELRDDAKGLITELRTELPL 207

Query: 385 YGVQLLLNWSWTPIFF 432
            G+  ++   + P  F
Sbjct: 208 LGMSTVVGKWYVPFIF 223


>At1g11340.1 68414.m01302 S-locus lectin protein kinase family
           protein contains protein kinase domain, Pfam:PF00069;
           contains S-locus glycoprotein family domain,
           Pfam:PF00954
          Length = 901

 Score = 29.9 bits (64), Expect = 0.82
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -1

Query: 232 TRTFHC-CLYGFDPQRTVHWPIHRHLGG*SNRVQAN 128
           ++TF C CL GF+P+   HW +    GG + + +A+
Sbjct: 369 SKTFECTCLPGFEPKFPRHWFLRDSSGGCTKKKRAS 404


>At2g23610.1 68415.m02817 esterase, putative similar to
           ethylene-induced esterase [Citrus sinensis] GI:14279437,
           polyneuridine aldehyde esterase [Rauvolfia serpentina]
           GI:6651393; contains Pfam profile PF00561: hydrolase,
           alpha/beta fold family
          Length = 263

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +1

Query: 187 FFAGQIRKDNSEKSWYDEL---KKPSWTPPKWVFGP 285
           F   ++RK+ S + W D +   +KP +    W+FGP
Sbjct: 121 FVWDKLRKETSREEWLDTVFTSEKPDFPSEFWIFGP 156


>At5g41870.1 68418.m05098 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to polygalacturonase PG1 [Glycine max]
           GI:5669846; contains PF00295: Glycosyl hydrolases family
           28
          Length = 449

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 318 ISHAAVENSPSWTKYPLWGS 259
           +SH  ++NSP WT +P++ S
Sbjct: 195 VSHVVLQNSPFWTLHPVYCS 214


>At1g18900.2 68414.m02353 pentatricopeptide (PPR) repeat-containing
           protein low similarity to 67kD chloroplastic RNA-binding
           protein, P67 [Arabidopsis thaliana] GI:9755842; contains
           Pfam profile PF01535: PPR repeat
          Length = 860

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +1

Query: 181 GLFFAGQIRKDNSEKSWYDELKKPSWTPPKWVFGPAWTVLYSSMGYASYLIWEECDG 351
           G    G++ K    K   D+  +PS  P      PA  +   S+ YAS ++ EE +G
Sbjct: 69  GCILPGEVTKPVVPKK-VDDFGRPSLLPQHVSSSPALPLKSHSVNYASTVVREEVEG 124


>At1g18900.1 68414.m02352 pentatricopeptide (PPR) repeat-containing
           protein low similarity to 67kD chloroplastic RNA-binding
           protein, P67 [Arabidopsis thaliana] GI:9755842; contains
           Pfam profile PF01535: PPR repeat
          Length = 860

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +1

Query: 181 GLFFAGQIRKDNSEKSWYDELKKPSWTPPKWVFGPAWTVLYSSMGYASYLIWEECDG 351
           G    G++ K    K   D+  +PS  P      PA  +   S+ YAS ++ EE +G
Sbjct: 69  GCILPGEVTKPVVPKK-VDDFGRPSLLPQHVSSSPALPLKSHSVNYASTVVREEVEG 124


>At3g30280.1 68416.m03824 transferase family protein similar to
           deacetylvindoline 4-O-acetyltransferase [Catharanthus
           roseus][GI:4091808][PMID:9681034], alcohol
           acyltransferase [Fragaria x
           ananassa][GI:10121328][PMID:10810141]
          Length = 443

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
 Frame = -2

Query: 288 SWTKYPL------WGSPAWLL*LIIPGLFTVVFTDLTRKEQSIGPSTDIWEDN 148
           SW K PL      WGSP W+   + P L  V     ++  Q I     + E+N
Sbjct: 369 SWCKLPLYEASFGWGSPVWIAGNVAPMLENVTMLIDSKDGQGIEAFVTLPEEN 421


>At4g23500.1 68417.m03387 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to SP|P27644 Polygalacturonase (EC 3.2.1.15)
           (Pectinase) {Agrobacterium tumefaciens}; contains
           PF00295: Glycosyl hydrolases family 28
          Length = 495

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 318 ISHAAVENSPSWTKYPLWGSPAWLL*LIIPGLFTVVFTD 202
           IS+    NSPSW  +P++ S  ++  L I    TV  TD
Sbjct: 217 ISNLTFLNSPSWHIHPVYSSNIYIQGLTILAPVTVPNTD 255


>At2g27230.1 68415.m03272 transcription factor-related contains weak
           similarity to anthocyanin 1 (GI:10998404) [Petunia x
           hybrida]; identical to cDNA bHLH transcription factor
           (bHLH delta gene) gi:32563001
          Length = 650

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 268 KWVFGPAWTVLYSSMGYASYLIWEECDGFTEDAVLPLTLYGV 393
           +W +   W +   +   +S LIWEEC   TE +  P  L G+
Sbjct: 17  QWSYAVFWKIGCQN---SSLLIWEECYNETESSSNPRRLCGL 55


>At5g54990.1 68418.m06848 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type
          Length = 226

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 279 WSSLDCSLQQHGICLLPHL 335
           W  +DC  +Q G CL+P L
Sbjct: 154 WVRIDCCCKQKGTCLVPAL 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,930,994
Number of Sequences: 28952
Number of extensions: 240278
Number of successful extensions: 611
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 722638680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)