Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0769
         (476 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0056 - 16046535-16047309,16047625-16048784,16049233-160493...    34   0.052
09_02_0597 - 11078577-11078722,11078806-11079291,11079346-110793...    28   3.4  
02_04_0140 - 20156655-20156834,20157139-20159345,20159970-20160042     27   7.8  

>06_03_0056 -
           16046535-16047309,16047625-16048784,16049233-16049340,
           16049487-16049672,16050342-16050398
          Length = 761

 Score = 34.3 bits (75), Expect = 0.052
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = -3

Query: 327 MSEKLRESSMYRVLSASFL--IYFQLYISSTSLQKIIYANEFKYGNQRIPA*LTIRSIET 154
           +S  +RE+   R  S  F    Y+QLY+S +S  K ++ N F Y    +P  L ++++  
Sbjct: 391 VSSPMRETEESRTNSTQFFSNAYYQLYLSFSSFNKEMFLN-FFYELSELPMELQVKAVRD 449

Query: 153 IRQITKMTFDI 121
            + +    + I
Sbjct: 450 FKSVLNREYQI 460


>09_02_0597 -
           11078577-11078722,11078806-11079291,11079346-11079374,
           11079773-11080343,11080802-11080814
          Length = 414

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = -3

Query: 423 FNKYKNLNRVW*SYNFNWTISNGTTYSNI*TEMSEKLRESSM--YRVLSASFL 271
           F+KY+  +  +  Y + W ++    YSNI T+ + +L  + M   RVL  +F+
Sbjct: 206 FHKYRFPDDQYDRYWYAWELTGNDPYSNISTQSAIELNTTFMVPLRVLQTAFV 258


>02_04_0140 - 20156655-20156834,20157139-20159345,20159970-20160042
          Length = 819

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 16/29 (55%), Positives = 17/29 (58%)
 Frame = +2

Query: 236 SDVDEIYN*K*IKKLALSTRYIELSRSFS 322
           SDVD I   K +KKL    RYIEL   FS
Sbjct: 456 SDVDIISFLKHLKKLVNDRRYIELEVEFS 484


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,569,790
Number of Sequences: 37544
Number of extensions: 158453
Number of successful extensions: 229
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)