Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0769
         (476 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032623-18|CAN99758.1|  330|Caenorhabditis elegans Hypothetical...    28   4.0  
Z83229-3|CAB05740.3|  369|Caenorhabditis elegans Hypothetical pr...    27   5.3  

>AL032623-18|CAN99758.1|  330|Caenorhabditis elegans Hypothetical
           protein Y43F8B.15 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 338 FKQK*VKNFEKVLCTECLVRVF*FIFNY-ISHPHHY 234
           F +K   + +KVLC E ++  F  +F+    HPH Y
Sbjct: 90  FHKKGCTDSQKVLCNEVIITTFHALFDLKKQHPHDY 125


>Z83229-3|CAB05740.3|  369|Caenorhabditis elegans Hypothetical
           protein F54F11.3 protein.
          Length = 369

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
 Frame = +3

Query: 228 SFVVMWMRYIIENK--LKNSH*ALGT*NFLEVFHSFLF--KCCYMLFHLKWSS*NCTI 389
           ++ V +  +I+E+   LK  +  L    F+  F SF +  KCCY+  H+K    N T+
Sbjct: 11  NYTVCFPIFILEDTRALKFPYSMLQALEFVLTFVSFYYVIKCCYVAIHIKSFHRNLTV 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,239,248
Number of Sequences: 27780
Number of extensions: 173005
Number of successful extensions: 313
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)