Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0768
         (528 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     29   0.025
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    29   0.025
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           29   0.025
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    29   0.025
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    26   0.24 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    24   0.72 
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   1.7  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   1.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.2  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   3.8  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   5.1  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   6.7  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 29.1 bits (62), Expect = 0.025
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +1

Query: 61  QPDSMATITMKPEYPPSEVYS-TSEPPPG 144
           QP  ++ + + P++PPSE Y+  S  PPG
Sbjct: 18  QPQHISGVVVDPKFPPSEEYNQNSYIPPG 46


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 29.1 bits (62), Expect = 0.025
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +1

Query: 61  QPDSMATITMKPEYPPSEVYS-TSEPPPG 144
           QP  ++ + + P++PPSE Y+  S  PPG
Sbjct: 18  QPQHISGVVVDPKFPPSEEYNQNSYIPPG 46


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 29.1 bits (62), Expect = 0.025
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +1

Query: 61  QPDSMATITMKPEYPPSEVYS-TSEPPPG 144
           QP  ++ + + P++PPSE Y+  S  PPG
Sbjct: 18  QPQHISGVVVDPKFPPSEEYNQNSYIPPG 46


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 29.1 bits (62), Expect = 0.025
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +1

Query: 61  QPDSMATITMKPEYPPSEVYS-TSEPPPG 144
           QP  ++ + + P++PPSE Y+  S  PPG
Sbjct: 18  QPQHISGVVVDPKFPPSEEYNQNSYIPPG 46


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 25.8 bits (54), Expect = 0.24
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -2

Query: 185 SSRSGPKLTPCADKPGGGSDVLYTSEGGYSGFIVIVAI--ESGW 60
           SS S  KL   A   G G+   YT E G  G+  IV +  E GW
Sbjct: 270 SSASNAKLG--APVKGAGNSGKYTGEAGMLGYNEIVELQKEGGW 311


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 24.2 bits (50), Expect = 0.72
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +1

Query: 100 YPPSEVYSTSEPPPG-LSAQGVN 165
           Y P  V ST  PPPG L + GV+
Sbjct: 203 YGPEPVPSTPYPPPGSLGSMGVS 225


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 152 ADKPGGGSDVLYTSEGGYSGFIVI 81
           A   GGG+   YT+E G+  F  I
Sbjct: 779 APASGGGTPGKYTAEAGFMSFYEI 802



 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 152 ADKPGGGSDVLYTSEGGYSGF 90
           A   GGG +  YT E G+  +
Sbjct: 350 APASGGGKEGTYTKESGFLAY 370


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +1

Query: 70  SMATITMKPEYPPSEVYSTSEPPPGLSAQGVNFG 171
           S A   M P Y  + +   S P    S QG +FG
Sbjct: 17  SNAMSPMTPTYSMNSMSCVSMPSMNCSPQGASFG 50


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +1

Query: 55   EHQPDSMATITMKPEYPPSEVYSTSEPPP 141
            E  P   A    + E PPS   ST  PPP
Sbjct: 1780 EEPPSVEAVEEEREEAPPSVHSSTVVPPP 1808


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 199 SGRFLLHLGNLYIGFELGSSS 261
           +GRF  H  NLY  F +   +
Sbjct: 169 TGRFTFHKKNLYYSFYISDKA 189


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -2

Query: 134 GSDVLYTSEGGYSGF 90
           G  VLYT   GY GF
Sbjct: 481 GDAVLYTIHMGYHGF 495


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 423 YLRRASRHLHDPVSSKTTHSTMPS 494
           Y+  A   +H PV+   T + MPS
Sbjct: 257 YILIAKTLMHHPVAMTGTKTVMPS 280


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,031
Number of Sequences: 336
Number of extensions: 2712
Number of successful extensions: 13
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12782794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)