Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0768
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    29   0.32 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.57 
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    28   0.75 
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23...    27   1.3  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.0  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.3  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    25   5.3  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    25   7.0  
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    25   7.0  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    25   9.2  
SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce...    25   9.2  

>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 22  LINSIRS*WKREHQPDSMATITMKPEYPPSEVYSTS 129
           ++ S+ +   R +  DS +TI  +PEYPP   +++S
Sbjct: 296 IMESVSANSSRRNSHDSNSTIICEPEYPPDTSFNSS 331


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.7 bits (61), Expect = 0.57
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +1

Query: 64  PDSMATITMKPEYPPSEVYSTSEPPP--GLSAQGVNFGP 174
           P   +T  + P  PP+   STS PPP    S+ G +  P
Sbjct: 293 PTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSP 331



 Score = 28.7 bits (61), Expect = 0.57
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +1

Query: 64  PDSMATITMKPEYPPSEVYSTSEPPP--GLSAQGVNFGP 174
           P   +T  + P  PP+   STS PPP    S+ G +  P
Sbjct: 347 PTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSP 385


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 28.3 bits (60), Expect = 0.75
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = +2

Query: 341 DALVADEPLPLANAHALHGVPPMLSSVLPETSQPSSSRPSLFKDDALNHAESKINEDKLQ 520
           D  V+DE   L   +A + +   L   + E  +P   + S FK+    H ++KI +++L 
Sbjct: 801 DTFVSDELNSLCATNAYNRISTFLRMQIDEECKPCQFKKSNFKE----HFQNKIYQEQLD 856

Query: 521 KI 526
           K+
Sbjct: 857 KL 858


>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +2

Query: 374 ANAHALHGVPPMLSSVLPETSQPSSSRPSLFKDDALNHAESKINEDKLQKI 526
           + A  ++ +PP  SSV   T+ P+S   S+  D  LN  E+ + E K  +I
Sbjct: 77  SEAPRINEIPPSTSSVEKSTTIPNS---SVVLDHLLNEGENTLEEVKPSEI 124


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 88  MKPEYPPSEVYSTSEPPPGLS 150
           + P YP S VY   E PP +S
Sbjct: 488 ISPYYPTSSVYGVYESPPHMS 508


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 61  QPDSMATITMKPEYPPSEVYSTSEPP 138
           QP + +T+   P  PPS  Y+T++PP
Sbjct: 86  QPGNASTMYASP--PPSSNYNTAKPP 109


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 196 NSGRF-LLHLGNLYIGFELGSSSFIMPSARAAGCNARQRTRFGRQSL 333
           NS R  +L L  LY+GF    S  ++   +A     R++ RFG++ +
Sbjct: 6   NSPRLNILELVLLYVGFFSIGSLNLLQKRKATSDPYRRKNRFGKEPI 52


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
            Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
 Frame = +2

Query: 299  LDKELALEGRAYGNDALVADEPLPLANAHALHGVPPMLSSV--LPETSQPSSSRPSLFKD 472
            L  EL   G        ++ + L L  AH   G+P   SS+  + +   PS S      D
Sbjct: 1141 LSSELIYGGNLVCGSKTISQKKLILPKAHLSDGLPDSSSSLHWVNKLINPSHSVIFFNTD 1200

Query: 473  DALNHAESKIN 505
            D L   ESK N
Sbjct: 1201 DILG-VESKTN 1210


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +3

Query: 411 CLQCYLRRASRHLHDPVSSKTTHS 482
           C QCYL    +++H+ + +K+T +
Sbjct: 292 CYQCYLISVGQNVHEYLRAKSTET 315


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 97  EYPPSEVYSTSEPPPG 144
           E  PSE Y+  EPPPG
Sbjct: 286 ELLPSEGYAILEPPPG 301


>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 388

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 42  VMEKRTPARLDGYNNYEAGIS 104
           +  K+   RL+GYN +++G S
Sbjct: 150 IYNKKAGVRLEGYNGHKSGFS 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,268,628
Number of Sequences: 5004
Number of extensions: 45507
Number of successful extensions: 150
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)