Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0768
         (528 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0)                33   0.15 
SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)                   32   0.34 
SB_56562| Best HMM Match : Lipase_GDSL (HMM E-Value=0.25)              29   2.4  
SB_585| Best HMM Match : G_glu_transpept (HMM E-Value=0.00035)         28   4.1  
SB_2430| Best HMM Match : 7tm_1 (HMM E-Value=1e-06)                    27   7.2  
SB_40634| Best HMM Match : fn3 (HMM E-Value=0.058)                     27   9.6  

>SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0)
          Length = 2532

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
 Frame = +2

Query: 248 WVAARSSCHQLEQLDAMLDK------ELALEGRAYGNDALVADEPLPLANAHALHGVPPM 409
           W  ARS+  + E+LD + +K      +L LEG   G         +PL N + +  +  M
Sbjct: 336 WCNARSNAKEREELDRLFEKYVPASVDLILEGILDGKQGKKLKTIIPLTNLNMVEQLSHM 395

Query: 410 LSSVLPETSQPSSSRPSL 463
           L ++LP     +   P +
Sbjct: 396 LDALLPPAESSNFLGPDV 413


>SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)
          Length = 739

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
 Frame = +1

Query: 25  INSIRS*WKREHQPDSMATITMKPEYPPSEVYSTSEPPPGLSAQG------VNFGPDRED 186
           I+++ S     ++P  MA +   P  PP   +    PPP     G      +N GP RE 
Sbjct: 175 ISNLSSAMAAANKPSPMAGMPPPPPPPPPPGFPGGAPPPPPPPFGAPPPPALNGGPPREY 234

Query: 187 CSTNSGR 207
           C   SGR
Sbjct: 235 CDVKSGR 241


>SB_56562| Best HMM Match : Lipase_GDSL (HMM E-Value=0.25)
          Length = 473

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 182 SRSGPKLTPCADKPGGGSDVLYTSEGGYSG 93
           S+SGPK+TP +   GGG  +   +  G SG
Sbjct: 227 SKSGPKVTPSSGMDGGGPSLPARALAGKSG 256


>SB_585| Best HMM Match : G_glu_transpept (HMM E-Value=0.00035)
          Length = 169

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/30 (36%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +2

Query: 392 HGVPPMLSSVLPETSQP-SSSRPSLFKDDA 478
           +G+PP  ++ +    +P SS+ PS+F+DD+
Sbjct: 31  YGIPPSAANFIVPRKRPLSSTAPSVFRDDS 60


>SB_2430| Best HMM Match : 7tm_1 (HMM E-Value=1e-06)
          Length = 439

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 156 LCR*ARWRF*CAVYFRRRIFRLHSY 82
           LC  AR    CA+Y  RR+FR H Y
Sbjct: 250 LCNLARQ---CAIYTSRRLFRAHQY 271


>SB_40634| Best HMM Match : fn3 (HMM E-Value=0.058)
          Length = 293

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +2

Query: 95  RNIRLLKYTAHQNR--HRAYRHRVS 163
           + IRL +Y  H +R  HR YRH V+
Sbjct: 10  KTIRLRRYDRHNSRFRHRVYRHDVN 34


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,615,360
Number of Sequences: 59808
Number of extensions: 359889
Number of successful extensions: 1316
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1311
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)